Browse Element(s) Details


Os.15320.1.S1_at

Description gb:AK071892.1
DB_XREF= gi:32981915
TID=Os.15320.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059K02, full insert sequence.
FL= gb:AK071892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3716010/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37130NANA6+21930577..21930972hypothetical protein
LOC_Os06g37140Os.36149.1.S1_x_at2/116+21935890..21942002expressed protein
LOC_Os06g37140OsAffx.8676.1.S1_at2/116+21935890..21942002expressed protein
LOC_Os06g37150Os.49627.1.S1_at11/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37150Os.49627.2.S1_x_at6/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37160Os.15320.1.S1_at10/116+21954184..21958747Endomembrane protein 70 containing protein, expressed
LOC_Os06g37170NANA6+21960364..21960660hypothetical protein
LOC_Os06g37180Os.8065.1.S1_at11/116+21962111..21967776Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os06g37190OsAffx.15790.1.S1_at2/116+21975117..21975752hypothetical protein
LOC_Os06g37200OsAffx.27974.1.S1_at11/116+21977311..21977643hypothetical protein
LOC_Os06g37210OsAffx.15791.1.S1_at11/116+21980417..21980713hypothetical protein
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15320.1.S1_at--912--3331Chr06:21954698..21954722 (25 bp)
CACTGTATCTTTTTGCTTATGCCAT
LOC_Os06g37160
Os.15320.1.S1_at--262--2711Chr06:21954642..21954666 (25 bp)
AAGCTTGTTTCAGGCATTCTCTACT
LOC_Os06g37160
Os.15320.1.S1_at--328--7891Chr06:21954615..21954639 (25 bp)
GGTTACATGCTGATCATCTCGTATG
LOC_Os06g37160
Os.15320.1.S1_at--17--631Chr06:21954593..21954617 (25 bp)
ATGCTTTCTTCGTGCTGACTGGTAC
LOC_Os06g37160
Os.15320.1.S1_at--1032--6971Chr06:21954572..21954596 (25 bp)
GTACCATTGGCTTCTATGCTTGCTT
LOC_Os06g37160
Os.15320.1.S1_at--12--651Chr06:21954557..21954581 (25 bp)
ATGCTTGCTTCTGGTTCGTGAGGAA
LOC_Os06g37160
Os.15320.1.S1_at--1014--6471Chr06:21954343..21954367 (25 bp)
GATACTCCCTGTAGCGTGACATGAA
LOC_Os06g37160
Os.15320.1.S1_at--805--6111Chr06:21954296..21954320 (25 bp)
GAGTGCTTCTTGTAATATTCCATGT
LOC_Os06g37160
Os.15320.1.S1_at--374--91Chr06:21954280..21954304 (25 bp)
ATTCCATGTCTCTTTATCTTACGGC
LOC_Os06g37160
Os.15320.1.S1_at--1130--411Chr06:21954265..21954289 (25 bp)
ATCTTACGGCTTCACATATTTCTTT
LOC_Os06g37160
Os.15320.1.S1_at--486--311NONE
ATACGTACTTTATCATCGGTTTGCT
NONE
Target Sequence 
CACTGTATCTTTTTGCTTATGCCATCTTCTACTTCTTCAACAAGCTGGAGATCACGAAGCTTGTTTCAGGCATTCTCTAC
TTTGGTTACATGCTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGT
GAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGCTACAAATGTGATACANATGGT
GTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGGTA
GGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATG
TTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTTCTTTTTCTGGAGATTTGAGGCATAT
CACATTCGAACATACGTACTTTATCATCGGTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis