Browse Element(s) Details


Os.15379.1.S1_a_at

Description gb:AK070808.1
DB_XREF= gi:32980831
TID=Os.15379.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0485G01.18 (P0485G01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072E18, full insert sequence.
FL= gb:AK070808.1 gb:AK111983.1 gb:AK102209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4833011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein
LOC_Os01g48349NANA1+28038431..28039484NA
LOC_Os01g48360OsAffx.21509.1.S1_at11/111+28041472..28042089expressed protein
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15379.1.S1_a_at--953--2511Chr01:28025699..28025799 (25 bp)
AACTTGTAGTGGGTCTACCTGATGA
LOC_Os01g48330
Os.15379.1.S1_a_at--753--6051Chr01:28025669..28025693 (25 bp)
GAGTTGGATTTGTGGATTCCTACAA
LOC_Os01g48330
Os.15379.1.S1_a_at--542--2471Chr01:28025645..28025669 (25 bp)
AACACATGTCCGTGGTTGTTTCACT
LOC_Os01g48330
Os.15379.1.S1_a_at--696--6771Chr01:28025628..28025652 (25 bp)
GTTTCACTGAACTCTATGGAACTGC
LOC_Os01g48330
Os.15379.1.S1_a_at--539--3131Chr01:28025576..28025600 (25 bp)
AATTAATCCCGTTCTCAGCCAAGGC
LOC_Os01g48330
Os.15379.1.S1_a_at--534--4391Chr01:28025559..28025583 (25 bp)
GCCAAGGCTATCTTTATATCGCATA
LOC_Os01g48330
Os.15379.1.S1_a_at--127--2291Chr01:28025503..28025527 (25 bp)
AAATGACTCATGTGATTCCCCTCTT
LOC_Os01g48330
Os.15379.1.S1_a_at--1137--5871Chr01:28025478..28025502 (25 bp)
GAGCCCAACAGTCCTCTGTATGGAT
LOC_Os01g48330
Os.15379.1.S1_a_at--1021--1491Chr01:28024364..28024388 (25 bp)
AGCACATCATGCAGCGAGCCAAATA
LOC_Os01g48330
Os.15379.1.S1_a_at--1115--2731Chr01:28024294..28024318 (25 bp)
AAGAACCTCGCGGTGCTAGTTCAAG
LOC_Os01g48330
Os.15379.1.S1_a_at--1037--7731Chr01:28023034..28023058 (25 bp)
GGTGGTGCATCAACATCTAAAACTC
LOC_Os01g48330
Target Sequence 
AACTTGTAGTGGGTCTACCTGATGATGGTGGAGTTGGATTTGTGGATTCCTACAAACACATGTCCGTGGTTGTTTCACTG
AACTCTATGGAACTGCTAGTTGATCTTATGCGATTNCCAGGGCAATTAATCCCGTTCTCAGCCAAGGCTATCTTTATATC
GCATATCTCTGCTGCTGGCGAGAGTGATTCAGCCGAAAATGACTCATGTGATTCCCCTCTTGAGCCCAACAGTCCTCTGT
ATGGATTATCAGATAAAGTTGAAGCTGAAGGAATTGAAGCTTCATCAAATCTATCTGGGCGTTCATTGCGCAATGTTATG
TTGAGGTCAAGAACATTTTCCGAGGGGAAATTGAGCACATCATGCAGCGAGCCAAATATTGCAAATGCCTTTTGGAGGCG
AAGCCAGAGAAGAGGAGTTGCTGAAGAACCTCGCGGTGCTAGTTCAAGCCCTGAGCATCCANTNNTGAAGACAAGGGCAA
GATCTATACTAGGTGGCGAGCAACATTCATTTCAGGAATATGCAGAAAGTGGAGTTACATCAAGATCAGATGGTCTAGGT
GGTGCATCAACATCTAAAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15379.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis