Browse Element(s) Details


Os.15618.1.S1_a_at

Description gb:AK067646.1
DB_XREF= gi:32977664
TID=Os.15618.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112D16, full insert sequence.
FL= gb:AK067646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1855011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18480OsAffx.28970.2.S1_at11/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.4.S1_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.3.S1_x_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein
LOC_Os03g18550Os.15618.1.S1_a_at11/113+10367022..10369954Mitochondrial carrier protein, expressed
LOC_Os03g18560Os.11237.1.S1_at10/113+10370703..10371797expressed protein
LOC_Os03g18570Os.12358.1.S1_at11/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18570Os.37025.1.S1_at1/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.37025.1.S1_at11/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.12358.1.S1_at2/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18590Os.7592.1.S1_at11/113+10379825..10383326malonyl CoA-acyl carrier protein transacylase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15618.1.S1_a_at--61--8351Chr03:10369399..10369423 (25 bp)
GGCTGTGAGCGCTTCTCAAGTAGCT
LOC_Os03g18550
Os.15618.1.S1_a_at--1121--3991Chr03:10369456..10369480 (25 bp)
CGTGATGGATATGCTGGGCTTATGA
LOC_Os03g18550
Os.15618.1.S1_a_at--663--2651Chr03:10369489..10369513 (25 bp)
AAGCCAAGAATGCTGTTCCACGCAC
LOC_Os03g18550
Os.15618.1.S1_a_at--709--1591Chr03:10369518..10369542 (25 bp)
AGCTGCTATCTGCTGGTCGACGTAC
LOC_Os03g18550
Os.15618.1.S1_a_at--1036--8591Chr03:10369531..10369555 (25 bp)
TGGTCGACGTACGAGGCCTCAAAGT
LOC_Os03g18550
Os.15618.1.S1_a_at--750--9731Chr03:10369603..10369627 (25 bp)
TCAAGGCTCAAAGCCCATGTATTTT
LOC_Os03g18550
Os.15618.1.S1_a_at--995--7011Chr03:10369640..10369664 (25 bp)
GTACTTCTATACTGCACCATACATC
LOC_Os03g18550
Os.15618.1.S1_a_at--594--3531Chr03:10369661..10369685 (25 bp)
CATCCTCAGCTGACAGAACGAAGCA
LOC_Os03g18550
Os.15618.1.S1_a_at--997--10271Chr03:10369856..10369880 (25 bp)
TTTGCCCAAATTTGATCAGAATCAC
LOC_Os03g18550
Os.15618.1.S1_a_at--294--5251Chr03:10369874..10369898 (25 bp)
GAATCACTCAGTGTACTGTATCCTT
LOC_Os03g18550
Os.15618.1.S1_a_at--110--1971Chr03:10369888..10369912 (25 bp)
ACTGTATCCTTTTGTGGCCGTCCTT
LOC_Os03g18550
Target Sequence 
GGCTGTGAGCGCTTCTCAAGTAGCTCAATAGGTGATGTATTCAGAACAATCATAAAGCGTGATGGATATGCTGGGCTTAT
GAGAGGATGGAAGCCAAGAATGCTGTTCCACGCACCTGCAGCTGCTATCTGCTGGTCGACGTACGAGGCCTCAAAGTCGT
TCTTCGAAAGATTCAACGAGAAAAGAAGGAAATAATCTGAACATTCAAGGCTCAAAGCCCATGTATTTTCTTGAAGTCAA
TGTACTTCTATACTGCACCATACATCCTCAGCTGACAGAACGAAGCAGCCCCCAAGATGCTGTTGTGGTGATGCAGGCCT
GCTAGTGATCCATGTGGAATGATGTACTGTGCATCAAAACATGTCCAAAGATAGATCTCTGTACCTTGTATTTCATTTCA
GCCAAGTTAATGTATTATTTTGCCTGCTGGGTCCAGATAATAATTACAAGGATAATTTTTGCCCAAATTTGATCAGAATC
ACTCAGTGTACTGTATCCTTTTGTGGCCGTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15618.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis