Browse Element(s) Details


Os.1574.1.S1_at

Description gb:AK058517.1
DB_XREF= gi:32968535
TID=Os.1574.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0537A05.24 (P0537A05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H02, full insert sequence.
FL= gb:AK058517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2250011/11Bucentaur or craniofacial development family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22440OsAffx.11157.1.S1_at3/111+12603727..12604185hypothetical protein
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1574.1.S1_at--947--5851Chr01:12631958..12631982 (25 bp)
GACCACATCCTCGAGCAGATAAAGA
LOC_Os01g22500
Os.1574.1.S1_at--477--1511Chr01:12631986..12632010 (25 bp)
AGCAGAAGCTGAGCGTCCTGGACAA
LOC_Os01g22500
Os.1574.1.S1_at--606--2771Chr01:12632081..12632105 (25 bp)
AAGAGCTCGAACAAATACCTGGATA
LOC_Os01g22500
Os.1574.1.S1_at--76--7751Chr01:12632107..12632131 (25 bp)
GGTGTCATTCTTGCAGAGAGCTGAT
LOC_Os01g22500
Os.1574.1.S1_at--809--4571Chr01:12632159..12632183 (25 bp)
GCGCGGCTGTCCATGATGTCGAAGC
LOC_Os01g22500
Os.1574.1.S1_at--711--6692Chr01:12632241..12632265 (25 bp)
GTTCCATCATCTTGCAGCTCCTTGT
LOC_Os01g22500
Os.1574.1.S1_at--457--3891Chr01:12632364..12632388 (25 bp)
CTGTGCACATTGATACTGGCTGTAT
LOC_Os01g22500
Os.1574.1.S1_at--99--8351Chr01:12632381..12632405 (25 bp)
GGCTGTATCCATTTCTTGTATGTAT
LOC_Os01g22500
Os.1574.1.S1_at--407--51Chr01:12632404..12632428 (25 bp)
ATTGTTTATGTATGCCAGTCTGGGC
LOC_Os01g22500
Os.1574.1.S1_at--1074--8051Chr01:12632442..12632466 (25 bp)
GGAGCTAGGCTTGGCAACATTCATG
LOC_Os01g22500
Os.1574.1.S1_at--36--8151Chr01:12632469..12632493 (25 bp)
GGAAAAACTCCACATTTGGCCTCTC
LOC_Os01g22500
Target Sequence 
GACCACATCCTCGAGCAGATAAAGAAGAAGCAGAAGCTGAGCGTCCTGGACAAGACGAAGAAAGACTGGGGAGAGTTCAA
GGAGGAGAACAAAGGGATGGAGGAGGAGCTGGACCAGTACAAGAAGAGCTCGAACAAATACCTGGATAAGGTGTCATTCT
TGCAGAGAGCTGATTACAGAGAGTTTGAGCGCGAGAGGGATGCGCGGCTGTCCATGATGTCGAAGCGGAAGTCGGATACG
CGAGAGGATTGATGTGTAGAAGGCCTGAAAAAGGAAAAAAAAANNGTTCCATCATCTTGCAGCTCCTTGTNGACATTCTT
TTTAGATGATCATGGGAACATCATTTTGTCTATGCATTCTNTTCTGTTTCTATCTGTTGATTCAATGTGAATGAAGNAGA
AGAAGATNCTGTGCACATTGATACTGGCTGTATCCATTTCTTGTATGTATTGTTTATGTATGCCAGTCTGGGCAGTAATT
TTTGGAGGAGCTAGGCTTGGCAACATTCATGAAGGAAAAACTCCACATTTGGCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis