Browse Element(s) Details


Os.1575.1.S1_at

Description gb:AK111377.1
DB_XREF= gi:32996586
TID=Os.1575.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.1575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) SPP30 homolog (P0510F09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B01, full insert sequence.
FL= gb:AK111377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5122011/11Transport protein particle subunit trs31, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51180Os.35344.18.S1_x_at10/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180Os.35344.3.S1_x_at8/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_at7/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_x_at4/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51190Os.41901.1.S1_x_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.41901.1.S1_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.20628.1.S1_at8/111+29750433..29754868expressed protein
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51260Os.38391.2.S1_at11/111+29796437..29798347Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1575.1.S1_at--258--1231Chr01:29772133..29772157 (25 bp)
AGTTCTTGAACTACTCTGTCACAGA
LOC_Os01g51220
Os.1575.1.S1_at--610--4611Chr01:29772289..29772313 (25 bp)
GCGAGAGACTCGACTGCTAGGTATA
LOC_Os01g51220
Os.1575.1.S1_at--3--171Chr01:29772313..29772337 (25 bp)
ATTATCGTTCATTCACAGCACTGTA
LOC_Os01g51220
Os.1575.1.S1_at--776--5311Chr01:29772801..29772823 (23 bp)
GAAGGTGGCTGACTCACTTGAGAAA
LOC_Os01g51220
Os.1575.1.S1_at--362--971Chr01:29772861..29772882 (22 bp)
AGGAGCTTCTTGTTAACCGGTTCAT
LOC_Os01g51220
Os.1575.1.S1_at--317--7871Chr01:29772947..29772971 (25 bp)
GGTTCATTTCGGTGCCCAAGGACAT
LOC_Os01g51220
Os.1575.1.S1_at--1141--8051Chr01:29772988..29773012 (25 bp)
GGAGCTTTTGTTGCAGGAATCGTAA
LOC_Os01g51220
Os.1575.1.S1_at--308--2451Chr01:29773108..29773132 (25 bp)
AAAATGCTGGCTTTCCTGCGGTAGT
LOC_Os01g51220
Os.1575.1.S1_at--738--3831Chr01:29773123..29773147 (25 bp)
CTGCGGTAGTTACTGCACACTTTGT
LOC_Os01g51220
Os.1575.1.S1_at--479--271Chr01:29773767..29773791 (25 bp)
ATATGTTCACACTTCTTTCTGATCA
LOC_Os01g51220
Os.1575.1.S1_at--78--2411Chr01:29773900..29773924 (25 bp)
AAACATTTGCTTGGATTTACCTCGT
LOC_Os01g51220
Target Sequence 
AGTTCTTGAACTACTCTGTCACAGAGAGAAGGGGAATAGGCGAGAGACTCGACTGCTAGGTATATTATCGTTCATTCACA
GCACTGTATGGAAAGTTTTGTTTGGGAAGGTGGCTGACTCACTTGAGAAAGGAACAGAACATGAGGATGAATACATGATT
AGTGAAAAGGAGCTTCTTGTTAACCGGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTTGC
AGGAATCGTAAGGGGTGTACTGGAAAATGCTGGCTTTCCTGCGGTAGTTACTGCACACTTTGTGCCAATTGAGGGCCAAC
AAAGGCCAAGGACAACAATCTTGATAAAATTTGCTGAAGAGGTTTTACAGCGAGAAGCTAGATTTGGCTAAATTTTATCA
TATGTTCACACTTCTTTCTGATCAATTGGTGAAGATACTGTTGAAATGTTTTTTTGTGGCTGACTCCACATGATTTGTGT
ACCAGTAGTTGCGAATAGAAGCGAAGGAGAAATCGTTTTGTTTGGAACTGTAAAACATTTGCTTGGATTTACCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis