Browse Element(s) Details


Os.15787.1.S1_at

Description gb:AK068561.1
DB_XREF= gi:32978578
TID=Os.15787.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152M24, full insert sequence.
FL= gb:AK068561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0268011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein
LOC_Os05g02690Os.10808.1.S1_at10/115+934047..935073expressed protein
LOC_Os05g02700OsAffx.14988.2.S1_x_at11/115+936510..937575hypothetical protein
LOC_Os05g02710NANA5+952049..953330transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g02720OsAffx.26698.1.S1_at11/115+953564..954816hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15787.1.S1_at--746--7991Chr05:926700..926724 (25 bp)
GGATGATGGCACATCGTCTACCAAA
LOC_Os05g02680
Os.15787.1.S1_at--534--7971Chr05:926649..926673 (25 bp)
GGATCCTGCAGACCCTGGAAACGAT
LOC_Os05g02680
Os.15787.1.S1_at--462--1331Chr05:926619..926643 (25 bp)
AGAGGATGATGGTACCCCTACTGCA
LOC_Os05g02680
Os.15787.1.S1_at--421--3151Chr05:926526..926550 (25 bp)
AATTCAGGACCCTTCTGCTGGTGAT
LOC_Os05g02680
Os.15787.1.S1_at--1085--211Chr05:926503..926527 (25 bp)
ATTTGGAAGGCGATCCTGACCCTGA
LOC_Os05g02680
Os.15787.1.S1_at--237--1631Chr05:926110..926134 (25 bp)
AGCGACCAGCTTTCATGTTGCTGTA
LOC_Os05g02680
Os.15787.1.S1_at--148--791Chr05:926078..926102 (25 bp)
ATGTGTTGACACCACCTTATCAGTG
LOC_Os05g02680
Os.15787.1.S1_at--400--3671Chr05:926063..926087 (25 bp)
CTTATCAGTGTATCAGGCCTCAATT
LOC_Os05g02680
Os.15787.1.S1_at--338--8431Chr05:926048..926072 (25 bp)
GGCCTCAATTCCGACACAATGTTTT
LOC_Os05g02680
Os.15787.1.S1_at--631--10491Chr05:926006..926030 (25 bp)
TTCAACCCGTGTTTGTACATTCACC
LOC_Os05g02680
Os.15787.1.S1_at--858--6811Chr05:925961..925985 (25 bp)
GTTTTTCTTTCTCTAGTGGCATGCA
LOC_Os05g02680
Target Sequence 
GGATGATGGCACATCGTCTACCAAAAAATGGAAGAGACCAAGGAAAGAGTCGGATCCTGCAGACCCTGGAAACGATGATT
TAGAGGATGATGGTACCCCTACTGCAAGCGATGCGAAAAAACNAAAGACAGATTCTACAGCATCAGGAGAAGATAAGGAT
AGTGAGGATCCTGCAATTCAGGACCCTTCTGCTGGTGATTTGGAAGGCGATCCTGACCCTGATCATTAGCTAAGGGTATA
AAGCAGCATCCAGCGACCAGCTTTCATGTTGCTGTATTAATCTATGTGTTGACACCACCTTATCAGTGTATCAGGCCTCA
ATTCCGACACAATGTTTTGTAGTTGAAATAGGTTTTTCAACCCGTGTTTGTACATTCACCTCATGAAACAAGCTTTCATA
GTTTTTCTTTCTCTAGTGGCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis