Browse Element(s) Details

Os.15810.2.S1_x_at

Description

gb:AK105052.1
DB_XREF= gi:32990261
TID=Os.15810.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C03, full insert sequence.
FL= gb:AK105052.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39760	11/11	Serine-threonine kinase receptor-associated protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39730	OsAffx.32233.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32259.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.26050.2.S2_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32256.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32255.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.26509.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.26050.37.S1_s_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32258.1.S1_x_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.26509.1.S1_s_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32234.1.S1_x_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.29056.1.S1_s_at	9/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32257.1.S1_x_at	8/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.47372.1.S1_x_at	7/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.47372.1.S1_at	7/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32260.1.S1_at	6/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32200.1.S1_x_at	2/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39740	OsAffx.30475.9.S1_s_at	10/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39740	OsAffx.30475.5.S1_x_at	9/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39740	OsAffx.30475.1.S1_s_at	9/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39750	Os.9286.1.S1_at	11/11	6	+	23607741..23610099	Fatty acid elongase, putative, expressed
LOC_Os06g39750	Os.9286.1.S1_s_at	11/11	6	+	23607741..23610099	Fatty acid elongase, putative, expressed
LOC_Os06g39760	Os.15810.2.S1_x_at	11/11	6	+	23612191..23620156	Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os06g39770	NA	NA	6	+	23621875..23623844	hypothetical protein
LOC_Os06g39780	Os.26811.1.A1_at	11/11	6	+	23631475..23633192	Cytochrome P450 family protein, expressed
LOC_Os06g39790	OsAffx.23796.1.S1_at	1/11	6	+	23638497..23642513	retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0000166	molecular_function	nucleotide binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15810.2.S1_x_at--681--1025	1	Chr06:23612497..23612521 (25 bp)	TTTGTTGATGCCCTTGGTTCCCGAC	LOC_Os06g39760
Os.15810.2.S1_x_at--289--135	1	Chr06:23612462..23612486 (25 bp)	AGAGATCTTGTCCTCCGTGACCAAA	LOC_Os06g39760
Os.15810.2.S1_x_at--1037--737	1	Chr06:23612446..23612470 (25 bp)	GTGACCAAAACGGTGGATTTCTGTA	LOC_Os06g39760
Os.15810.2.S1_x_at--226--757	1	Chr06:23612419..23612443 (25 bp)	GGGCCCTCACCAAATAGACAGTGTC	LOC_Os06g39760
Os.15810.2.S1_x_at--842--565	1	Chr06:23612403..23612427 (25 bp)	GACAGTGTCAGGGTAGTATCTATCT	LOC_Os06g39760
Os.15810.2.S1_x_at--496--1005	1	Chr06:23612337..23612361 (25 bp)	TAGTATCGTTGATTGCATTCACAGA	LOC_Os06g39760
Os.15810.2.S1_x_at--112--233	1	Chr06:23612308..23612332 (25 bp)	AAAGTCTTGTATTCCGCTGGTGGCC	LOC_Os06g39760
Os.15810.2.S1_x_at--1108--389	1	Chr06:23612292..23612316 (25 bp)	CTGGTGGCCGTGATACAGCAGATGC	LOC_Os06g39760
Os.15810.2.S1_x_at--198--153	1	Chr06:23612276..23612300 (25 bp)	AGCAGATGCCATTGTGTTCACCGGT	LOC_Os06g39760
Os.15810.2.S1_x_at--1092--995	1	Chr06:23612239..23612263 (25 bp)	TACCCTTCTATGGACTCTTTTCTTA	LOC_Os06g39760
Os.15810.2.S1_x_at--383--811	1	Chr06:23612228..23612252 (25 bp)	GGACTCTTTTCTTATCAGGAATTGC	LOC_Os06g39760

Target Sequence

TTTGTTGATGCCCTTGGTTCCCGACGCAAGGGGGGAGAGATCTTGTCCTCCGTGACCAAAACGGTGGATTTCTGTATGGG
GCCCTCACCAAATAGACAGTGTCAGGGTAGTATCTATCTACAGTGCCAAAATAAACCAAGAGGAAAGCAAGTTGGTAGTT
TAGTATCGTTGATTGCATTCACAGAAGTGAAAGTCTTGTATTCCGCTGGTGGCCGTGATACAGCAGATGCCATTGTGTTC
ACCGGTTTTTGCCTCCCCTACCCTTCTATGGACTCTTTTCTTATCAGGAATTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis