Browse Element(s) Details


Os.15991.1.S1_at

Description gb:AK066768.1
DB_XREF= gi:32976786
TID=Os.15991.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683B11.10 (P0683B11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088O12, full insert sequence.
FL= gb:AK066768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5186011/11violaxanthin de-epoxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51850OsAffx.2305.2.S1_at11/111+30137820..30139315hypothetical protein
LOC_Os01g51860Os.15991.1.S1_at11/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51860OsAffx.13678.2.S1_at1/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51870OsAffx.23754.1.S1_x_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51870Os.33184.1.S1_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51880OsAffx.11567.1.S1_s_at11/111+30149180..30150624hypothetical protein
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51904Os.50521.1.S1_at2/111+30166253..30168706hypothetical protein
LOC_Os01g51920Os.13835.2.S2_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S3_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S1_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0010028biological_processxanthophyll cycle
GO:0016122biological_processxanthophyll metabolism
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0046422molecular_functionviolaxanthin de-epoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15991.1.S1_at--1149--5511Chr01:30146305..30146329 (25 bp)
GAAAAGAATCAGGTATTTTGCAGAC
LOC_Os01g51860
Os.15991.1.S1_at--890--5651Chr01:30146327..30146351 (25 bp)
GACAGGGTGATGTGTTCTAACGGCA
LOC_Os01g51860
Os.15991.1.S1_at--695--3731Chr01:30146343..30146367 (25 bp)
CTAACGGCACAGAAGGTTCCCAGAT
LOC_Os01g51860
Os.15991.1.S1_at--669--1011Chr01:30146356..30146380 (25 bp)
AGGTTCCCAGATGACTTGCACGGTT
LOC_Os01g51860
Os.15991.1.S1_at--681--9031Chr01:30146372..30146396 (25 bp)
TGCACGGTTGCACCTCTAAGTCAGG
LOC_Os01g51860
Os.15991.1.S1_at--30--1971Chr01:30146405..30146429 (25 bp)
ACTGTGGTCTGTGGATACTGCGGAC
LOC_Os01g51860
Os.15991.1.S1_at--987--6471Chr01:30146418..30146442 (25 bp)
GATACTGCGGACTTGATCCAGTGCA
LOC_Os01g51860
Os.15991.1.S1_at--339--5691Chr01:30146427..30146451 (25 bp)
GACTTGATCCAGTGCAGGAATTGCT
LOC_Os01g51860
Os.15991.1.S1_at--941--931Chr01:30146442..30146466 (25 bp)
AGGAATTGCTTGCACTGTTGCACCC
LOC_Os01g51860
Os.15991.1.S1_at--488--3871Chr01:30146456..30146480 (25 bp)
CTGTTGCACCCACTAGACTACAAAT
LOC_Os01g51860
Os.15991.1.S1_at--832--5231Chr01:30146487..30146511 (25 bp)
GAATAACATTCAGGTATCGCTGAAA
LOC_Os01g51860
Target Sequence 
GAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCAC
CTCTAAGTCAGGCANGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCA
CCCACTAGACTACAAATATGTAAGAATAACATTCAGGTATCGCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis