Browse Element(s) Details


Os.15992.1.S1_at

Description gb:AK107524.1
DB_XREF= gi:32992733
TID=Os.15992.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F12, full insert sequence.
FL= gb:AK107524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5819011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58140Os.57117.1.S1_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.57117.1.S1_x_at11/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58140Os.54216.1.S1_at9/114+34407308..34412274Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g58150Os.35344.18.S1_x_at11/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150Os.35344.3.S1_x_at9/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58150OsAffx.22940.5.S1_x_at3/114+34413210..34419259Transposable element protein, putative, MuDR
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15992.1.S1_at--522--4051Chr04:34436487..34436511 (25 bp)
CGATCGGTATGCAGGTAGTGTGTTC
LOC_Os04g58190
Os.15992.1.S1_at--983--5011Chr04:34436477..34436501 (25 bp)
GCAGGTAGTGTGTTCTTCGATCGGT
LOC_Os04g58190
Os.15992.1.S1_at--405--671Chr04:34436452..34436476 (25 bp)
ATGAAGTATATTTTGCTGAGCTAGG
LOC_Os04g58190
Os.15992.1.S1_at--904--9111Chr04:34436439..34436463 (25 bp)
TGCTGAGCTAGGGATTATGATATAA
LOC_Os04g58190
Os.15992.1.S1_at--193--10391Chr04:34436364..34436388 (25 bp)
TTTTCTTCTCTCACCAATTTCATAC
LOC_Os04g58190
Os.15992.1.S1_at--942--3371Chr04:34436353..34436377 (25 bp)
CACCAATTTCATACGCTTGCACAAT
LOC_Os04g58190
Os.15992.1.S1_at--164--9951Chr04:34436342..34436366 (25 bp)
TACGCTTGCACAATGATGTGGTGAT
LOC_Os04g58190
Os.15992.1.S1_at--882--151Chr04:34436319..34436343 (25 bp)
ATTATCATTGGGATCAGTGAATCGT
LOC_Os04g58190
Os.15992.1.S1_at--844--1111Chr04:34436304..34436328 (25 bp)
AGTGAATCGTGATCTGTAGCTGGAA
LOC_Os04g58190
Os.15992.1.S1_at--784--5351Chr04:34436282..34436306 (25 bp)
GAAGATGTGTTTACGTATGTGCAGT
LOC_Os04g58190
Os.15992.1.S1_at--186--1831Chr04:34436270..34436294 (25 bp)
ACGTATGTGCAGTGTTAATGACAAT
LOC_Os04g58190
Target Sequence 
CGATCGGTATGCAGGTAGTGTGTTCTTCGATCGGTATGAAGTATATTTTGCTGAGCTAGGGATTATGATATAATTATTGG
GAATGTAATTAAGCAGCNTCAATTATCCNANGTGGTGTTTGCAGTTTTCTTCTCTCACCAATTTCATACGCTTGCACAAT
GATGTGGTGATTATCATTGGGATCAGTGAATCGTGATCTGTAGCTGGAAGATGTGTTTACGTATGTGCAGTGTTAATGAC
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis