Browse Element(s) Details


Os.16068.3.S1_at

Description gb:AK064357.1
DB_XREF= gi:32974375
TID=Os.16068.3
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B05, full insert sequence.
FL= gb:AK064357.1 gb:AK102318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4784011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47800Os.20540.1.S1_at11/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800OsAffx.24771.1.S1_x_at1/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47810Os.46084.1.S1_at9/112+29232278..29235749Dof domain, zinc finger family protein, expressed
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47830Os.16068.2.S1_at11/112+29253460..29254535expressed protein
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16068.3.S1_at--915--351Chr02:29257421..29257445 (25 bp)
ATAAGAGGGCTTCACTTGCTCGAGC
LOC_Os02g47840
Os.16068.3.S1_at--660--2931Chr02:29257163..29257187 (25 bp)
AAGGAAGTCATCTGCAGCGAGGTGA
LOC_Os02g47840
Os.16068.3.S1_at--1019--6011Chr02:29257137..29257161 (25 bp)
GAGAGTTCAACCAGATCTTCTAGTT
LOC_Os02g47840
Os.16068.3.S1_at--952--7551Chr02:29257104..29257125 (22 bp)
GGGCCTTGGACCATTTCAGAGGGTT
LOC_Os02g47840
Os.16068.3.S1_at--107--10511Chr02:29254524..29254916 (25 bp)
TTCAGAGGGTTTTCGTGGGCACAGT
LOC_Os02g47840
Os.16068.3.S1_at--1083--5871Chr02:29254499..29254523 (25 bp)
GAGCGAGTTCTGTGTTAAGCATGCC
LOC_Os02g47840
Os.16068.3.S1_at--325--6771Chr02:29254486..29254510 (25 bp)
GTTAAGCATGCCGACTGTCCAGTCA
LOC_Os02g47840
Os.16068.3.S1_at--547--8691Chr02:29254471..29254495 (25 bp)
TGTCCAGTCATCACCATCAAACGGA
LOC_Os02g47840
Os.16068.3.S1_at--281--5291Chr02:29254448..29254472 (25 bp)
GAAGGCCGATGAAGCACCGCAGGAC
LOC_Os02g47840
Os.16068.3.S1_at--339--8111Chr02:29254427..29254451 (25 bp)
GGACCCTGTTGATGATTGATCCCTT
LOC_Os02g47840
Os.16068.3.S1_at--695--8831Chr02:29254411..29254435 (25 bp)
TGATCCCTTCAATGTCATACTTGAG
LOC_Os02g47840
Target Sequence 
ATAAGAGGGCTTCACTTGCTCGAGCACTTTGTGAATCAATGCCATCAACTGGAGATAAAATGTGAAGCATGGATTAAACA
AGGGGATCCAAAGGAAGTCATCTGCAGCGAGGTGAAGAGAGTTCAACCAGATCTTCTAGTTGTGGGAAGTAGGGGCCTTG
GACCATTTCAGAGGGTTTTCGTGGGCACAGTGAGCGAGTTCTGTGTTAAGCATGCCGACTGTCCAGTCATCACCATCAAA
CGGAAGGCCGATGAAGCACCGCAGGACCCTGTTGATGATTGATCCCTTCAATGTCATACTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16068.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis