Browse Element(s) Details


Os.16089.1.A1_at

Description gb:AK100484.1
DB_XREF= gi:32985693
TID=Os.16089.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023097B07, full insert sequence.
FL= gb:AK100484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3232011/11folate/biopterin transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32280OsAffx.828.1.S1_x_at1/115+18736757..18737946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32290OsAffx.9949.1.S1_at1/115+18739991..18745654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32300OsAffx.30227.2.S1_at11/115+18747126..18747926hypothetical protein
LOC_Os05g32310OsAffx.14914.1.S1_x_at8/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310Os.26574.1.S1_at4/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310OsAffx.14914.2.S1_x_at3/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32320Os.16089.1.A1_at11/115+18759608..18762691folate/biopterin transporter family protein, expressed
LOC_Os05g32330Os.5673.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32330Os.50604.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32340OsAffx.25367.1.S1_at1/115+18771955..18776279retrotransposon, putative, centromere-specific, expressed
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g32360Os.4626.1.S1_at11/115+18785338..18789028Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008517molecular_functionfolic acid transporter activity
GO:0015231molecular_function5-formyltetrahydrofolate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16089.1.A1_at--938--4771Chr05:18762092..18762116 (25 bp)
GCTGCCCTTCAGTGTTCTTGTTGCA
LOC_Os05g32320
Os.16089.1.A1_at--1047--2411Chr05:18762116..18762140 (25 bp)
AAAACTTTGCCCTTCTGGGTGTGAG
LOC_Os05g32320
Os.16089.1.A1_at--657--10431Chr05:18762148..18762172 (25 bp)
TTATGGCTTTTGTCATGTCTGCACT
LOC_Os05g32320
Os.16089.1.A1_at--18--10751Chr05:18762208..18762232 (25 bp)
TTGCACTTGCTGAATTCATGGGAGT
LOC_Os05g32320
Os.16089.1.A1_at--332--8031Chr05:18762237..18762261 (25 bp)
GGAGGTGATTTCTCAGCGCTGCCGA
LOC_Os05g32320
Os.16089.1.A1_at--753--1651Chr05:18762251..18762275 (25 bp)
AGCGCTGCCGACTTGTCTGTTGATT
LOC_Os05g32320
Os.16089.1.A1_at--961--7171Chr05:18762265..18762289 (25 bp)
GTCTGTTGATTGAGGCTGCATGCAC
LOC_Os05g32320
Os.16089.1.A1_at--947--651Chr05:18762284..18762308 (25 bp)
ATGCACAATGCTACCACTCTTTTTC
LOC_Os05g32320
Os.16089.1.A1_at--727--6991Chr05:18762384..18762408 (25 bp)
GTACTGGTGCTCGTTATACTTTACA
LOC_Os05g32320
Os.16089.1.A1_at--1019--311Chr05:18762399..18762423 (25 bp)
ATACTTTACAGTCATCTTTGGGATC
LOC_Os05g32320
Os.16089.1.A1_at--744--10651Chr05:18762493..18762517 (25 bp)
TTCCTCGAGAGGTTTTCAGTGTTTG
LOC_Os05g32320
Target Sequence 
GCTGCCCTTCAGTGTTCTTGTTGCAAAACTTTGCCCTTCTGGGTGTGAGGGATCACTTATGGCTTTTGTCATGTCTGCAC
TTGCCCTCGCAACTATCATCAGCGGTTATCTTGGGGTTGCACTTGCTGAATTCATGGGAGTATCTGGAGGTGATTTCTCA
GCGCTGCCGACTTGTCTGTTGATTGAGGCTGCATGCACAATGCTACCACTCTTTTTCTCCTCATTGATAAAAGAGAGGAG
AGAAAAGGAGAAGAAAGAAGAATAGAATTCACCTATAGGATTCGATGAGGTTGTACTGGTGCTCGTTATACTTTACAGTC
ATCTTTGGGATCATATGGATTTGCCGATAGTTCGGTTTCATAATCAGAACATAGCTGGTGGACACAATTTAAAAGACTAG
GTTCCTCGAGAGGTTTTCAGTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16089.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis