Browse Element(s) Details


Os.16112.1.S1_s_at

Description gb:BI801574
DB_XREF= gi:16574278
DB_XREF=H053H03
CLONE=H053H03
TID=Os.16112.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16112 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3028011/11expressed protein
LOC_Os10g104801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30230Os.15352.1.S1_at11/116+17442893..17445408expressed protein
LOC_Os06g30240OsAffx.27878.1.S1_x_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30240OsAffx.27878.1.S1_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30250OsAffx.4970.1.S1_at11/116+17453254..17454482expressed protein
LOC_Os06g30260NANA6+17458707..17462983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30270NANA6+17465821..17468563hypothetical protein
LOC_Os06g30280Os.16112.1.S1_s_at11/116+17469749..17470494expressed protein
LOC_Os06g30280OsAffx.4971.1.S1_at8/116+17469749..17470494expressed protein
LOC_Os06g30290OsAffx.31780.2.S1_s_at6/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.2.S1_x_at2/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.21663.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30300OsAffx.27879.1.S1_at10/116+17486640..17487153hypothetical protein
LOC_Os06g30310Os.18215.1.S1_at11/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30310OsAffx.10482.1.S1_x_at1/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16112.1.S1_s_at--1143--5971Chr06:17470326..17470350 (25 bp)
GAGACTATAGTGTCCCGTGGAGAAA
LOC_Os06g30280
Os.16112.1.S1_s_at--1051--5531Chr06:17470289..17470313 (25 bp)
GACAACCACTTAGGGAGGAACCACA
LOC_Os06g30280
Os.16112.1.S1_s_at--476--3111Chr06:17470236..17470260 (25 bp)
AATATTCACAATCAGGCCAAGCATC
LOC_Os06g30280
Os.16112.1.S1_s_at--681--9631Chr06:17470225..17470249 (25 bp)
TCAGGCCAAGCATCAGTGCTCTAAG
LOC_Os06g30280
Os.16112.1.S1_s_at--561--9051Chr06:17470073..17470097 (25 bp)
TGCAGTGAAGATGTATGGATCCTAT
LOC_Os06g30280
Os.16112.1.S1_s_at--268--4991Chr06:17470025..17470049 (25 bp)
GCATGCATGGCTTGCTTAATAGTAA
LOC_Os06g30280
Os.16112.1.S1_s_at--156--7951Chr06:17469980..17470004 (25 bp)
GGATATTTGAATTCCAGTAGTTATT
LOC_Os06g30280
Os.16112.1.S1_s_at--400--1751Chr06:17469874..17469898 (25 bp)
ACCTACTAAGCATGTGACACATCCT
LOC_Os06g30280
Os.16112.1.S1_s_at--378--5632Chr10:5529819..5529879 (25 bp)
GACACATCCTAGTACCAGGTTGGTT
LOC_Os10g10480
Os.16112.1.S1_s_at--701--7131Chr06:17469797..17469821 (25 bp)
GTCATATCATCAGTGGCTTTATTGT
LOC_Os06g30280
Os.16112.1.S1_s_at--831--7531Chr06:17469785..17469809 (25 bp)
GTGGCTTTATTGTCTATACATTTGA
LOC_Os06g30280
Target Sequence 
GAGACTATAGTGTCCCGTGGAGAAAACACAACGGGAAGACAACCACTTAGGGAGGAACCACAGAAGATGACACTGATGGA
GGAATCACCCAATATTCACAATCAGGCCAAGCATCAGTGCTCTAAGGANCTAAGCGATGAAGAGGACTCTGAGAAGGGTG
AAAGTAGTGGTCAAAAGAATGGTGATGATAAAAGGGATTCCNAAAAGCATGGTAGCAATGGTGAAAAACGAGTATGATAA
TTGAAGGTATATATGCAGTGAAGATGTATGGATCCTATGAAACTAGCANTAAATGGAATAAGCATGCATGGCTTGCTTAA
TAGTAATTATAACCATATGTGGAAATGGATATTTGAATTCCAGTAGTTATTGTAAGTATTTTTAGNTTCTTCTATGAAAG
NTATGTATTATAATTTTATTAANANNNANNNCCTTCATTCCAAATAAACCACCTACTAAGCATGTGACACATCCTAGTAC
CAGGTTGGTTTATTTTGGGACGGAGGGAATACCATCTTGCTATCTTGTCATATCATCAGTGGCTTTATTGTCTATACATT
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16112.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis