Browse Element(s) Details


Os.16157.1.S1_at

Description gb:AK107425.1
DB_XREF= gi:32992634
TID=Os.16157.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-F11, full insert sequence.
FL= gb:AK107425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6259011/11steroleosin-B, putative, expressed
LOC_Os04g327101/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16157.1.S1_at--58--8591Chr03:35367970..35367994 (25 bp)
TGGTACGACGTCTTCCTTGTCTTCC
LOC_Os03g62590
Os.16157.1.S1_at--167--5131Chr03:35367773..35367797 (25 bp)
GCACAAGCTGGAGTGACGACAAGTT
LOC_Os03g62590
Os.16157.1.S1_at--55--2231Chr03:35367755..35367779 (25 bp)
ACAAGTTTGGGCGACAGTGCTAGCT
LOC_Os03g62590
Os.16157.1.S1_at--840--2131Chr03:35367742..35367766 (25 bp)
ACAGTGCTAGCTGCGTGCGTTATGT
LOC_Os03g62590
Os.16157.1.S1_at--355--3831Chr03:35367732..35367756 (25 bp)
CTGCGTGCGTTATGTGCAGCTGTGC
LOC_Os03g62590
Os.16157.1.S1_at--1063--9031Chr03:35367718..35367742 (25 bp)
TGCAGCTGTGCGCAGATGACACGAT
LOC_Os03g62590
Os.16157.1.S1_at--948--9151Chr03:35367710..35367734 (25 bp)
TGCGCAGATGACACGATGCAGTGAT
LOC_Os03g62590
Os.16157.1.S1_at--318--751Chr03:35367683..35367707 (25 bp)
ATGTATGAACATGAGTTCGCGCCAT
LOC_Os03g62590
Os.16157.1.S1_at--1115--9112Chr04:19525770..19525796 (23 bp)
TGCTGTGTGATATCTGGTGGTGACT
LOC_Os04g32710
Os.16157.1.S1_at--844--7491Chr03:35367632..35367656 (25 bp)
GTGGTGACTGTGATATCTATGAACT
LOC_Os03g62590
Os.16157.1.S1_at--6--5471Chr03:35367612..35367636 (25 bp)
GAACTGATTTGGTCGGTGTTTGAAT
LOC_Os03g62590
Target Sequence 
TGGTACGACGTCTTCCTTGTCTTCCGCGCCTTCGCGCCCGACGTCCTCGCCTGGACGTTCCGCCTCCTGCTGTCCACGCC
ATCGCCGTCGCCGCCGGCGAGCGCCCGTCGCCACCAGCTCGCCGCGCTGCCGGCTCCGCCGCTCCACCCGCTGCTCGAGT
ANCCGTCGGCTCGGAGCCCCGGGCGCGCCGCCCAGCAGCACAAGCTGGAGTGACGACAAGTTTGGGCGACAGTGCTAGCT
GCGTGCGTTATGTGCAGCTGTGCGCAGATGACACGATGCAGTGATATATGTATGAACATGAGTTCGCGCCATNGCATGAT
ATTGCTGTGTGATATCTGGTGGTGACTGTGATATCTATGAACTGATTTGGTCGGTGTTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis