Browse Element(s) Details


Os.16167.1.S1_at

Description gb:BI801798
DB_XREF= gi:16574502
DB_XREF=H060H12
CLONE=H060H12
TID=Os.16167.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16167 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g293403/11SAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29290OsAffx.7246.1.S1_x_at11/1111+16482703..16484521Cytochrome P450 family protein, expressed
LOC_Os11g29300OsAffx.3620.1.S1_at1/1111+16488754..16489495hypothetical protein
LOC_Os11g29309NANA11+16497812..16498119NA
LOC_Os11g29320OsAffx.442.1.S1_x_at4/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.442.1.S1_at2/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.30226.2.S1_x_at1/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29330OsAffx.19066.1.S1_at11/1111+16505327..16505782hypothetical protein
LOC_Os11g29340Os.49189.1.S1_at10/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29340Os.16167.1.S1_at3/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29350Os.24759.1.A1_at10/1111+16525649..16529877phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g29360OsAffx.7247.1.S1_at11/1111+16530025..16531461pentatricopeptide repeat-containing protein, putative
LOC_Os11g29370Os.11937.1.S1_at11/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370Os.21038.1.S1_s_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370OsAffx.28452.1.S1_x_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16167.1.S1_at--964--111NONE
ATTCATTGGTGTCTCCGGAGAAGAA
NONE
Os.16167.1.S1_at--187--2911NONE
AAGGTTGTTGGAGCTTGAACACACA
NONE
Os.16167.1.S1_at--839--3211NONE
CAAGGGTTTAGAGTACAAGCCACGA
NONE
Os.16167.1.S1_at--757--7031NONE
GTACAAGCCACGAAACTTATCCGAT
NONE
Os.16167.1.S1_at--132--2511NONE
AACTTATCCGATAGCCTAAATTAGG
NONE
Os.16167.1.S1_at--172--7751NONE
GGATGGATTTTTTATCGGCGAAAGG
NONE
Os.16167.1.S1_at--659--7071Chr11:16507810..16507834 (25 bp)
GTAATTCCGTTCCATAAACATCCAT
LOC_Os11g29340
Os.16167.1.S1_at--375--8151Chr11:16507850..16507874 (25 bp)
GGAAATCATTCCCTAAATCTTTCAT
LOC_Os11g29340
Os.16167.1.S1_at--993--3051NONE
AATCTTTCATATAGCATTAACCTCT
NONE
Os.16167.1.S1_at--375--9551NONE
TCTTTTCTCTTTTAGACCGCCAAAT
NONE
Os.16167.1.S1_at--616--2351Chr11:16507916..16507940 (25 bp)
AAAGCTTATTAATTTCTACCACGAT
LOC_Os11g29340
Target Sequence 
ATTCATTGGTGTCTCCGGAGAAGAAGAGAAGGTTGTTGGAGCTTGAACACACAAGGGTTTAGAGTACAAGCCACGAAACT
TATCCGATAGCCTAAATTAGGTAATATTTGGGGATGGATTTTTTATCGGCGAAAGGTTAGTAATTCCGTTCCATAAACAT
CCATACGAATAAATTAAATGGAAATCATTCCCTAAATCTTTCATATAGCATTAACCTCTCTTTTCTCTTTTAGACCGCCA
AATTTAAAAGCTTATTAATTTCTACCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis