Browse Element(s) Details


Os.16271.1.S1_s_at

Description gb:BI802162
DB_XREF= gi:16574866
DB_XREF=H072D08
CLONE=H072D08
TID=Os.16271.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16271 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4001011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39960Os.12561.1.S1_at11/115+23399874..2340257140S ribosomal protein S26, putative, expressed
LOC_Os05g39970OsAffx.27246.1.S1_at11/115+23403212..23404002hypothetical protein
LOC_Os05g39970OsAffx.7080.1.S1_x_at1/115+23403212..23404002hypothetical protein
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein
LOC_Os05g39990Os.50825.1.S1_s_at11/115+23412448..23414366Alpha-expansin 1 precursor, putative, expressed
LOC_Os05g40000Os.56291.1.S1_at11/115+23419461..23420987expressed protein
LOC_Os05g40000OsAffx.29576.3.S1_x_at11/115+23419461..23420987expressed protein
LOC_Os05g40010OsAffx.27248.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010OsAffx.27248.1.S1_x_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010Os.16271.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40020Os.57149.1.S1_at11/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40020Os.35921.2.S1_x_at1/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40030NANA5+23428589..23429032hypothetical protein
LOC_Os05g40040OsAffx.15034.1.S1_at11/115+23431884..23436764expressed protein
LOC_Os05g40050OsAffx.27250.2.S1_at11/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40050OsAffx.22147.1.S1_x_at1/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40060OsAffx.4567.2.S1_at11/115+23446217..23447293WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16271.1.S1_s_at--67--8431Chr05:23425692..23425716 (25 bp)
GGCCGTGAATGAATAATCAACGTGC
LOC_Os05g40010
Os.16271.1.S1_s_at--667--5271Chr05:23425698..23425722 (25 bp)
GAATGAATAATCAACGTGCTTGTAT
LOC_Os05g40010
Os.16271.1.S1_s_at--21--371Chr05:23425704..23425728 (25 bp)
ATAATCAACGTGCTTGTATGTACCA
LOC_Os05g40010
Os.16271.1.S1_s_at--728--3071Chr05:23425706..23425730 (25 bp)
AATCAACGTGCTTGTATGTACCATG
LOC_Os05g40010
Os.16271.1.S1_s_at--604--9711Chr05:23425708..23425732 (25 bp)
TCAACGTGCTTGTATGTACCATGTC
LOC_Os05g40010
Os.16271.1.S1_s_at--428--3251Chr05:23425709..23425733 (25 bp)
CAACGTGCTTGTATGTACCATGTCG
LOC_Os05g40010
Os.16271.1.S1_s_at--96--2571Chr05:23425710..23425734 (25 bp)
AACGTGCTTGTATGTACCATGTCGT
LOC_Os05g40010
Os.16271.1.S1_s_at--15--4011Chr05:23425712..23425736 (25 bp)
CGTGCTTGTATGTACCATGTCGTGT
LOC_Os05g40010
Os.16271.1.S1_s_at--325--7331Chr05:23425713..23425737 (25 bp)
GTGCTTGTATGTACCATGTCGTGTA
LOC_Os05g40010
Os.16271.1.S1_s_at--55--4931Chr05:23425715..23425739 (25 bp)
GCTTGTATGTACCATGTCGTGTACT
LOC_Os05g40010
Os.16271.1.S1_s_at--1022--10791Chr05:23425717..23425741 (25 bp)
TTGTATGTACCATGTCGTGTACTCA
LOC_Os05g40010
Target Sequence 
GGCCGTGAATGAATAATCAACGTGCTTGTATGTACCATGTCGTGTACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16271.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis