Browse Element(s) Details


Os.163.1.S1_at

Description gb:D38011.1
DB_XREF= gi:971283
TID=Os.163.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.163 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ribosomal protein S31, complete cds.
PROD=ribosomal protein S31
FL= gb:D38011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6079011/1140S ribosomal protein S26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60740Os.8827.1.S1_at10/111+35456714..35457762Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein
LOC_Os01g60770Os.4644.1.S1_at11/111+35472366..35474187Alpha-expansin 1 precursor, putative, expressed
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed
LOC_Os01g60800OsAffx.23877.2.S1_at11/111+35483290..35485628expressed protein
LOC_Os01g60810Os.14824.1.S1_at11/111+35494450..35496144uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g60820NANA1+35498495..35499819hypothetical protein
LOC_Os01g60830Os.12112.1.S1_at11/111+35502347..35503304expressed protein
LOC_Os01g60850Os.35434.1.S1_at9/111+35503300..35507063expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.163.1.S1_at--490--4651Chr01:35480981..35481186 (25 bp)
GCGTGCGTGCACGATGGATACGTTC
LOC_Os01g60790
Os.163.1.S1_at--441--731Chr01:35481177..35481199 (23 bp)
ATGGATACGTTCTCCCCAAGCTTTA
LOC_Os01g60790
Os.163.1.S1_at--187--4211Chr01:35481188..35481212 (25 bp)
CCCCAAGCTTTACGCCAAGGTGCAT
LOC_Os01g60790
Os.163.1.S1_at--930--3211Chr01:35481203..35481227 (25 bp)
CAAGGTGCATCACTGTGTGTCCTGT
LOC_Os01g60790
Os.163.1.S1_at--881--7471Chr01:35481217..35481241 (25 bp)
GTGTGTCCTGTGCAATCCATGCTCA
LOC_Os01g60790
Os.163.1.S1_at--426--5091Chr01:35482376..35482400 (25 bp)
GCACCTGATTGTCTCCGGAGTGATA
LOC_Os01g60790
Os.163.1.S1_at--858--6091Chr01:35482393..35482417 (25 bp)
GAGTGATAAACCTTTTTTCAGTCGT
LOC_Os01g60790
Os.163.1.S1_at--864--10311Chr01:35482408..35482432 (25 bp)
TTTCAGTCGTTTCCCTAAATCTAGC
LOC_Os01g60790
Os.163.1.S1_at--681--3051Chr01:35482425..35482449 (25 bp)
AATCTAGCATGATACCAGGGTGTTG
LOC_Os01g60790
Os.163.1.S1_at--1076--7731Chr01:35482443..35482467 (25 bp)
GGTGTTGAACTTTATCTAGGACCAA
LOC_Os01g60790
Os.163.1.S1_at--237--9471Chr01:35482457..35482481 (25 bp)
TCTAGGACCAACCTGTTCTTTTTCA
LOC_Os01g60790
Target Sequence 
GCGTGCGTGCACGATGGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTGCAATCCATGCTCA
CATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGACCGCAGGCCTCCGGAACGCTTCCGCCGCAGGGAGGATAGGCCCC
AAGGCCCTCGTCCAGGTGGTGGCGCTCCCGCTCCTGGTGGAGCTGCTGCTCCTGCCCCCAACGTTGCTCGCACCTGATTG
TCTCCGGAGTGATAAACCTTTTTTCAGTCGTTTCCCTAAATCTAGCATGATACCAGGGTGTTGAACTTTATCTAGGACCA
ACCTGTTCTTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis