Browse Element(s) Details


Os.16333.1.S1_at

Description gb:AK072524.1
DB_XREF= gi:32982547
TID=Os.16333.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127J10, full insert sequence.
FL= gb:AK099258.1 gb:AK072240.1 gb:AK072524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4031011/11isocitrate dehydrogenase, NAD-dependent family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40250Os.53658.1.S1_at8/114+23720171..23722903hypothetical protein
LOC_Os04g40260Os.54774.1.S1_x_at2/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40260Os.54774.1.S1_at1/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40270OsAffx.14215.1.S1_at11/114+23730035..23730310hypothetical protein
LOC_Os04g40279OsAffx.10250.3.S1_at4/114+23732589..23732974NA
LOC_Os04g40290Os.54640.1.S1_at6/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.56299.1.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.49200.2.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40300Os.49160.1.S1_at11/114+23740972..23744231transglutaminase, putative, expressed
LOC_Os04g40310Os.16333.1.S1_at11/114+23744901..23748682isocitrate dehydrogenase, NAD-dependent family protein, expressed
LOC_Os04g40320Os.27286.1.S1_at10/114+23749115..23753127expressed protein
LOC_Os04g40330OsAffx.14216.1.S1_x_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40330Os.9429.1.S1_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40340Os.52304.1.S1_at8/114+23764935..23767303hypothetical protein
LOC_Os04g40350NANA4+23771794..23772611GRF zinc finger family protein
LOC_Os04g40360Os.14919.1.S1_at4/114+23773032..23778935transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004449molecular_functionisocitrate dehydrogenase (NAD+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16333.1.S1_at--509--7771Chr04:23745465..23745489 (25 bp)
GGTGCTTCTGCAGGAAACGTCGGAA
LOC_Os04g40310
Os.16333.1.S1_at--201--5571Chr04:23745418..23745442 (25 bp)
GAAAGCAAACCCTATTGCGCTGCTT
LOC_Os04g40310
Os.16333.1.S1_at--434--8871Chr04:23745374..23745398 (25 bp)
TGAGGCATTTGCAGTTCCCGTCATT
LOC_Os04g40310
Os.16333.1.S1_at--974--2191Chr04:23745294..23745318 (25 bp)
ACAAAGGATCTAGGCGGCACCAGCA
LOC_Os04g40310
Os.16333.1.S1_at--663--4491Chr04:23745219..23745243 (25 bp)
GCCGGTGCACGCCTGAGAGATTAAT
LOC_Os04g40310
Os.16333.1.S1_at--542--3171Chr04:23745126..23745150 (25 bp)
CAATTTGTACGACGCTTCCCAGGAA
LOC_Os04g40310
Os.16333.1.S1_at--861--491Chr04:23745098..23745122 (25 bp)
ATCGTGAGGCAATATCTGTTTCTTA
LOC_Os04g40310
Os.16333.1.S1_at--618--3871Chr04:23745083..23745107 (25 bp)
CTGTTTCTTAGTTCTGTTCCACAAA
LOC_Os04g40310
Os.16333.1.S1_at--34--3151Chr04:23745057..23745081 (25 bp)
AATTCAGGAACCCACGAGGAGTATT
LOC_Os04g40310
Os.16333.1.S1_at--886--6171Chr04:23745042..23745066 (25 bp)
GAGGAGTATTCTTCACACGATGCTG
LOC_Os04g40310
Os.16333.1.S1_at--907--611Chr04:23744977..23745001 (25 bp)
ATGCTGGCAGCCTTAATTCCTTTAA
LOC_Os04g40310
Target Sequence 
GGTGCTTCTGCAGGAAACGTCGGAAACGAGAACATCTTAGAGCAGAAGAAAGCAAACCCTATTGCGCTGCTTCTATCATC
CGCCATGATGTTGAGGCATTTGCAGTTCCCGTCATTCGCCGACCGGCTGGAGACGGCGGTGAAGCGTGTCATTGCGGAAG
GCAAGTACAGAACAAAGGATCTAGGCGGCACCAGCACCACCCAGGAAGTCACTGATGCAGTAATCGCCAATCTGGATTAG
ATACCAGCCGGTGCACGCCTGAGAGATTAATTCTTTTGGGGGACTAGCTCATTTGTCCCGACTCCCGATTATTTTTGTTT
CGTATAGAGTTTAGATCGTCAATTTGTACGACGCTTCCCAGGAAGGAATCGTGAGGCAATATCTGTTTCTTAGTTCTGTT
CCACAAATAATTCAGGAACCCACGAGGAGTATTCTTCACACGATGCTGTGTAACAAGGTAAAGAGAACACCTTTTGTTGC
AAAGGGAAATGCTGGCAGCCTTAATTCCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis