Browse Element(s) Details


Os.16604.1.S1_at

Description gb:AK103867.1
DB_XREF= gi:32989076
TID=Os.16604.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149H01, full insert sequence.
FL= gb:AK103867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0344011/11F-box domain containing protein, expressed
LOC_Os11g036808/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03390OsAffx.31564.2.S1_at11/1112+1314753..1316248F-box domain containing protein, expressed
LOC_Os12g03400Os.6369.1.S1_at11/1112+1316605..1318869expressed protein
LOC_Os12g03410OsAffx.30800.1.S1_at11/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03410OsAffx.30800.2.S1_x_at2/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03420NANA12+1331912..1332472VQ motif family protein
LOC_Os12g03430OsAffx.19468.1.S1_s_at10/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.1.S1_at9/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.2.S1_at5/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03440Os.16604.1.S1_at11/1112+1341002..1343257F-box domain containing protein, expressed
LOC_Os12g03450Os.49338.1.S1_at11/1112+1345249..1347123pentatricopeptide, putative, expressed
LOC_Os12g03460Os.23141.1.S1_x_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03460Os.23141.1.S1_at10/1112+1353985..1356035small zinc finger, putative, expressed
LOC_Os12g03470Os.8403.1.S1_a_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03470Os.8403.1.S1_s_at11/1112+1358609..1365600Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16604.1.S1_at--656--2892Chr12:1342691..1342715 (25 bp)
AAGGTGGATCTTTGGCTTCTGCAAG
LOC_Os12g03440
Os.16604.1.S1_at--625--7812Chr12:1342729..1342753 (25 bp)
GGTATGGGTCCACAAGTATCGAATT
LOC_Os12g03440
Os.16604.1.S1_at--1089--4411Chr12:1342759..1342783 (25 bp)
GCCAGTGATAGAGATTCGCCGTTTA
LOC_Os12g03440
Os.16604.1.S1_at--646--7871Chr12:1342800..1342824 (25 bp)
GGTTTCTTCATATTGTTTCCCAAGA
LOC_Os12g03440
Os.16604.1.S1_at--899--7952Chr12:1342844..1342868 (25 bp)
GGATCTTATTGGCAGTTTCACTACG
LOC_Os12g03440
Os.16604.1.S1_at--1116--10072Chr12:1342903..1342927 (25 bp)
TAGTGGCCGCATGCTGAACATTACT
LOC_Os12g03440
Os.16604.1.S1_at--1118--2072Chr12:1342920..1342944 (25 bp)
ACATTACTCCACATATTCTCCAAGA
LOC_Os12g03440
Os.16604.1.S1_at--445--5552Chr12:1342943..1342967 (25 bp)
GAAAGTCTCGTTCCACACGAAGTGT
LOC_Os12g03440
Os.16604.1.S1_at--1108--2311Chr12:1342986..1343010 (25 bp)
AAAGTAGACATGCACCACATTTCTT
LOC_Os12g03440
Os.16604.1.S1_at--52--2892Chr12:1343141..1343165 (25 bp)
AAGGGCAGCATTCACTCTGATCAGT
LOC_Os12g03440
Os.16604.1.S1_at--446--10472Chr12:1343233..1343257 (25 bp)
TTAAATGCCTGAGACTGTTTTTTCC
LOC_Os12g03440
Target Sequence 
AAGGTGGATCTTTGGCTTCTGCAAGATTATAAGCATATGGTATGGGTCCACAAGTATCGAATTGAATTGCCAGTGATAGA
GATTCGCCGTTTAGTAGAAGATGATGTTTGGTTTCTTCATATTGTTTCCCAAGAGGGTGATGTCTTGGTTGATGGATCTT
ATTGGCAGTTTCACTACGACATGAAGGGTAATTTGCTGGAGAAATTTCAATGTAGTGGCCGCATGCTGAACATTACTCCA
CATATTCTCCAAGAAAGTCTCGTTCCACACGAAGTGTTCCAAATTCTAGATAATGAAAGTAGACATGCACCACATTTCTT
CAGGGGGTTGTAGAGCATACTTTCTNTACNGTGAGGCTANTTCACACTTTTGGGNGTCTATTCATTGGATACTGCAATTT
TAGCGATGGAACTTAATTTTGTAGTGAATGGTCAATGATCTGNTGTTGCAAAGGGCAGCATTCACTCTGATCAGTATTTC
TGTNACCTCCACATGTTCATCTTNAACATNGAGGGTATCATTTCNGTACTGTACNTGGNAAATTTAAATGCCTGAGACTG
TTTTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis