Browse Element(s) Details


Os.16682.1.S1_at

Description gb:AK065762.1
DB_XREF= gi:32975780
TID=Os.16682.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1065G12.33 (B1065G12.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042H11, full insert sequence.
FL= gb:AK065762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g677308/111-imidazole-4-carboxamide isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein
LOC_Os01g67710OsAffx.21785.2.S1_at9/111+39676432..39678264hypothetical protein
LOC_Os01g67710OsAffx.21785.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67710Os.53962.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed
LOC_Os01g67750Os.49959.1.S1_at11/111+39701785..39706394expressed protein
LOC_Os01g67760OsAffx.6537.1.S1_at1/111+39708477..39709213hypothetical protein
LOC_Os01g67770Os.49428.1.S1_at11/111+39714083..39716843myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16682.1.S1_at--407--3951Chr01:39691972..39691995 (24 bp)
CGGATACTATTTGATGATTTGCACA
LOC_Os01g67730
Os.16682.1.S1_at--155--151Chr01:39692017..39692041 (25 bp)
ATTACTTGCATCATCTGGGTTCTAA
LOC_Os01g67730
Os.16682.1.S1_at--1137--7871Chr01:39692034..39692058 (25 bp)
GGTTCTAAAAAGTTCAGTCTGACGC
LOC_Os01g67730
Os.16682.1.S1_at--846--2311Chr01:39692081..39692105 (25 bp)
AAAGCATGGTCTTAGCCGGGATCCT
LOC_Os01g67730
Os.16682.1.S1_at--479--2011Chr01:39692136..39692157 (22 bp)
ACTCAGATTCAGATTGTGACACCGA
LOC_Os01g67730
Os.16682.1.S1_at--455--3351Chr01:39692157..39692178 (22 bp)
CACCGAGGAAAACTTATGTACGCTT
LOC_Os01g67730
Os.16682.1.S1_at--996--3671Chr01:39692176..39692200 (25 bp)
CTTTCCGTACCAAGTCTCAGTAACA
LOC_Os01g67730
Os.16682.1.S1_at--46--9111Chr01:39692212..39692236 (25 bp)
TGCTGCCAATGCTGGAGAGCACTAG
LOC_Os01g67730
Os.16682.1.S1_at--466--8331Chr01:39692373..39692397 (25 bp)
GGCTGATGTTTCAGCCCATCCAAAA
NONE
Os.16682.1.S1_at--983--2071Chr01:39692451..39692475 (25 bp)
ACATACGACGTTTCAATTGGCTGGA
NONE
Os.16682.1.S1_at--878--3171Chr01:39692464..39692488 (25 bp)
CAATTGGCTGGAATGTTTTTGACTC
NONE
Target Sequence 
CGGATACTATTTGATGATTTGCACAAGACGGGGATCTTCACATGGGATTACTTGCATCATCTGGGTTCTAAAAAGTTCAG
TCTGACGCGAAATTATATCAGAACTTTGAGAAAGCATGGTCTTAGCCGGGATCCTCAGAGAAGGAAATGATGAACACAAN
CCTTCACTCAGATTCAGATTGTGACACCGAGGAAAACTTATGTACGCTTTCCGTACCAAGTCTCAGTAACAGTAATGACT
GCTGCTGCCAATGCTGGAGAGCACTAGAACGAGAAATACAGAATGTATGAAACCAGATAATCAACTGCTGAATATAGTAA
CAGTTTTAGGAATGGCGACTGAANACTGATGANACTNTAGGGTTCATTNTTTGAGGTTTAANAATGAGGGCTGCTGTTTT
GGAGGCTGATGTTTCAGCCCATCCAAAAANAGCTGNGTGTAGNGNGTGAGATNTACGNGNGTATNTGACGGAGAAAAANA
AACATACGACGTTTCAATTGGCTGGAATGTTTTTGACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis