Browse Element(s) Details


Os.16820.1.S1_at

Description gb:AK120302.1
DB_XREF= gi:37989925
TID=Os.16820.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052I03, full insert sequence.
FL= gb:AK120302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5715010/11Tubulin-specific chaperone A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed
LOC_Os02g57140Os.53873.1.S1_x_at11/112+34985381..34990734expressed protein
LOC_Os02g57140Os.51285.1.S1_at1/112+34985381..34990734expressed protein
LOC_Os02g57150Os.16820.1.S1_at10/112+34996907..34998925Tubulin-specific chaperone A, putative, expressed
LOC_Os02g57160Os.11619.1.A1_at11/112+34999045..35003489ABC1 family protein, expressed
LOC_Os02g57170Os.50935.1.S1_at11/112+35005524..35007516expressed protein
LOC_Os02g57180Os.10342.1.S1_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.10342.1.S1_s_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_s_at10/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_x_at2/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57190Os.4855.1.S1_at11/112+35022700..35034598myosin XI, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0007021biological_processtubulin folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16820.1.S1_at--756--5351Chr02:34997153..34997178 (25 bp)
GAAGATCAGACGTCGACCTGCAAGA
LOC_Os02g57150
Os.16820.1.S1_at--862--891Chr02:34997224..34997248 (25 bp)
AGGCGGCCAAGACTGCTGACATGAA
LOC_Os02g57150
Os.16820.1.S1_at--766--7991Chr02:34998479..34998503 (25 bp)
GGATGATGGTCCCAGACTGCCATAA
LOC_Os02g57150
Os.16820.1.S1_at--809--2671NONE
AAGCGACTTGGAACTGCACTGGCAG
NONE
Os.16820.1.S1_at--486--10491Chr02:34998573..34998597 (25 bp)
TTAAATTCTGCATATCCTCTTCTTC
LOC_Os02g57150
Os.16820.1.S1_at--1007--2631Chr02:34998607..34998631 (25 bp)
AACCATTGTTCTATTGCAGGCTGAA
LOC_Os02g57150
Os.16820.1.S1_at--907--10431Chr02:34998734..34998758 (25 bp)
TTATGAAATCCCTGCAAACCTCTGT
LOC_Os02g57150
Os.16820.1.S1_at--893--6891Chr02:34998813..34998837 (25 bp)
GTATCCATTTTGTGGTTCCTGAGCC
LOC_Os02g57150
Os.16820.1.S1_at--831--8191Chr02:34998845..34998869 (25 bp)
GGAAGATCTGGCACTGAACCATCCT
LOC_Os02g57150
Os.16820.1.S1_at--545--5431Chr02:34998860..34998884 (25 bp)
GAACCATCCTTACTTTATGTGCTTG
LOC_Os02g57150
Os.16820.1.S1_at--1036--10111Chr02:34998875..34998899 (25 bp)
TATGTGCTTGCTTGTTCTTCCTGAA
LOC_Os02g57150
Target Sequence 
GAAGATCAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAA
GACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGGAGAATGTTTTAGCCGAGTCAAGGATGA
TGGTCCCAGACTGCCATAAGCGACTTGGAACTGCACTGGCAGACTTGAAAGCAACTCTGGTATCGTATGAATTTTTTTCT
GGCGACATTTAAATTCTGCATATCCTCTTCTTCAGTAACCACAACCATTGTTCTATTGCAGGCTGAATTGAAGGAATCAA
ATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGCTGTCGTCAAGCCAACAGAAGATTGA
ATTCGTTTTTTATGAAATCCCTGCAAACCTCTGTTCTGTTGGGGCCATAGTAGCTCAACTAGTATTATGATGTTTGCTGT
GAATTCATGTATCCATTTTGTGGTTCCTGAGCCCTAACTTGGAAGATCTGGCACTGAACCATCCTTACTTTATGTGCTTG
CTTGTTCTTCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis