Browse Element(s) Details


Os.16933.1.S1_at

Description gb:BI811816
DB_XREF= gi:16577721
DB_XREF=B001B07
CLONE=B001B07
TID=Os.16933.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506B12.26 (P0506B12.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6199010/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61940Os.35425.1.S1_at11/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61940Os.49930.1.S2_x_at1/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61950OsAffx.21764.1.S1_at11/111+36193638..36194192hypothetical protein
LOC_Os01g61960OsAffx.23888.1.S1_at11/111+36195770..36196597hypothetical protein
LOC_Os01g61970Os.6681.1.S1_at10/111+36197920..36200047Lung seven transmembrane receptor family protein, expressed
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16933.1.S1_at--857--2311Chr01:36212081..36212105 (25 bp)
AAAGGTCTCCTAGATTCAGTCTCTG
LOC_Os01g61990
Os.16933.1.S1_at--603--10531Chr01:36212067..36212091 (25 bp)
TTCAGTCTCTGTCTCTGGGATTGAT
LOC_Os01g61990
Os.16933.1.S1_at--1143--10471Chr01:36211978..36212002 (25 bp)
TTACAATTCCTTCCTGTATCAACCA
LOC_Os01g61990
Os.16933.1.S1_at--789--5231NONE
GAATACCCATTGTCCCATTGTGCAA
NONE
Os.16933.1.S1_at--533--8331Chr01:36211909..36211933 (25 bp)
GGCTCCTTCAGCTGCAGAATTTTAT
LOC_Os01g61990
Os.16933.1.S1_at--1071--5211Chr01:36211892..36211917 (25 bp)
GAATTTTATGGCACCAACGAGCTCA
LOC_Os01g61990
Os.16933.1.S1_at--642--6531Chr01:36211830..36211854 (25 bp)
GATTTTCATTCTATTGCCAACTTTC
LOC_Os01g61990
Os.16933.1.S1_at--189--10571Chr01:36211787..36211811 (25 bp)
TTCTTATTCTTTCTGTGCCTACTTA
LOC_Os01g61990
Os.16933.1.S1_at--1081--7391Chr01:36211756..36211780 (25 bp)
GTGATGCGCTCTTCAGTTTTCATAA
LOC_Os01g61990
Os.16933.1.S1_at--522--5571Chr01:36211715..36211739 (25 bp)
GACACGTTTTAGTTCCCTTTATGCT
LOC_Os01g61990
Os.16933.1.S1_at--395--3671Chr01:36211680..36211705 (25 bp)
CTTATTCTTACATGTTGCCCTTTGA
LOC_Os01g61990
Target Sequence 
AAAGGTCTCCTAGATTCAGTCTCTGTCTCTGGGATTGATATGTACATGAAAATTCCAGATATACACATTAACAGATAACA
TAGCTCACAGTATTTCTTGATTTTTACAATTCCTTCCTGTATCAACCAACCACTCAGAACTAAATGGAATACCCATTGTC
CCATTGTGCAAGGCTCCTTCAGCTGCAGAATTTTATGGCACCAACGAGCTCAACCTATTGTACAGTGAGTTGCATGTTTT
TTTGTTTTTGATTTTCATTCTATTGCCAACTTTCATGAGAAAGGATTTTTTTTTCTTATTCTTTCTGTGCCTACTTATAG
TTTGTGATGCGCTCTTCAGTTTTCATAATGTAACACAGAACCTGACACGTTTTAGTTCCCTTTATGCTATTGGTCATCTT
ATTCTTACATGTTGCCCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis