Browse Element(s) Details


Os.16993.1.S1_at

Description gb:AK103881.1
DB_XREF= gi:32989090
TID=Os.16993.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, At3g23610 (OJ1460_H08.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149O18, full insert sequence.
FL= gb:AK103881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2946910/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29409Os.33080.4.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.3.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.4.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.2.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.1.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29430Os.23675.1.S1_at10/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_x_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29450NANA1+16831394..16837809retrotransposon protein, putative, unclassified
LOC_Os01g29469Os.54170.1.S1_at11/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29469Os.16993.1.S1_at10/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29488OsAffx.2119.1.S1_at11/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_at5/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9652.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.20947.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.54774.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29507OsAffx.1196.1.S1_at2/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.15647.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.31752.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.1196.1.S1_x_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.17243.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507Os.10626.4.A1_s_at1/111+16867044..16872779hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16993.1.S1_at--1097--6671Chr01:16844639..16844663 (25 bp)
GTTGCCAGATCATTAAATCCAGCCT
LOC_Os01g29469
Os.16993.1.S1_at--72--9851Chr01:16844626..16844650 (25 bp)
TAAATCCAGCCTTTGCAGCTGAATT
LOC_Os01g29469
Os.16993.1.S1_at--454--4451Chr01:16844618..16844642 (25 bp)
GCCTTTGCAGCTGAATTTAACTACA
LOC_Os01g29469
Os.16993.1.S1_at--413--10751Chr01:16843399..16843419 (21 bp)
TTGAAGTACTTGACAGCCCAGACAT
LOC_Os01g29469
Os.16993.1.S1_at--1148--5631Chr01:16843388..16843412 (25 bp)
GACAGCCCAGACATTGATTTGGCAA
LOC_Os01g29469
Os.16993.1.S1_at--418--5271Chr01:16843352..16843376 (25 bp)
GAATGCTTTAGTTTCATTGATGAAT
LOC_Os01g29469
Os.16993.1.S1_at--37--6331Chr01:16843334..16843358 (25 bp)
GATGAATCTATCAGCTCTGGTGGCA
LOC_Os01g29469
Os.16993.1.S1_at--780--3691Chr01:16843327..16843351 (25 bp)
CTATCAGCTCTGGTGGCAATGTTCT
LOC_Os01g29469
Os.16993.1.S1_at--547--2991Chr01:16843310..16843334 (25 bp)
AATGTTCTGGTTCATTGCTTTGCTG
LOC_Os01g29469
Os.16993.1.S1_at--1018--10531Chr01:16843300..16843324 (25 bp)
TTCATTGCTTTGCTGGACGGTCAAG
LOC_Os01g29469
Os.16993.1.S1_at--693--5751NONE
GACGGTCAAGAAGTGTCACGATTAT
NONE
Target Sequence 
GTTGCCAGATCATTAAATCCAGCCTTTGCAGCTGAATTTAACTACAAGAAGATTGAAGTACTTGACAGCCCAGACATTGA
TTTGGCAAAGCATTTTGATGAATGCTTTAGTTTCATTGATGAATCTATCAGCTCTGGTGGCAATGTTCTGGTTCATTGCT
TTGCTGGACGGTCAAGAAGTGTCACGATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis