Browse Element(s) Details


Os.17075.1.S1_at

Description gb:AK100054.1
DB_XREF= gi:32985263
TID=Os.17075.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157P08, full insert sequence.
FL= gb:AK100054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5597011/11ResB-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55920OsAffx.13499.1.S1_at11/113+31779680..31783343hypothetical protein
LOC_Os03g55930Os.4177.1.S1_at10/113+31784349..3178617930S ribosomal protein S9, chloroplast precursor, putative, expressed
LOC_Os03g55940OsAffx.3620.1.S1_at11/113+31788253..31788867hypothetical protein
LOC_Os03g55950Os.15251.1.S1_at9/113+31792873..31796791f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os03g55960Os.9049.1.S1_at10/113+31797473..31798395EF hand family protein, expressed
LOC_Os03g55970Os.17075.1.S1_at11/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_x_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.57396.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g56000Os.26557.1.A1_at11/113+31814055..31817328hypothetical protein
LOC_Os03g56010OsAffx.25727.1.S1_at11/113+31824100..31824555bZIP transcription factor family protein

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Gene Ontology Classification
GO idTypeName
GO:0017004biological_processcytochrome complex assembly
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17075.1.S1_at--14--211Chr03:31799794..31799818 (25 bp)
ATTTGCAAATGTTCACTTGTGGTTG
LOC_Os03g55970
Os.17075.1.S1_at--236--6191Chr03:31799744..31799768 (25 bp)
GAGGACATAAAATTATACCGTCTTT
LOC_Os03g55970
Os.17075.1.S1_at--235--10191Chr03:31799731..31799755 (25 bp)
TATACCGTCTTTTCGGTGGAAGATA
LOC_Os03g55970
Os.17075.1.S1_at--45--6511Chr03:31799710..31799734 (25 bp)
GATAGGCTATGATTCAACTGATCCC
LOC_Os03g55970
Os.17075.1.S1_at--32--6571Chr03:31799700..31799724 (25 bp)
GATTCAACTGATCCCACTCTGTATA
LOC_Os03g55970
Os.17075.1.S1_at--527--371Chr03:31799690..31799714 (25 bp)
ATCCCACTCTGTATACAACCCAAAA
LOC_Os03g55970
Os.17075.1.S1_at--351--2611Chr03:31799674..31799698 (25 bp)
AACCCAAAACGGCACACAGCAATAT
LOC_Os03g55970
Os.17075.1.S1_at--667--5191Chr03:31799656..31799680 (25 bp)
GCAATATTTTGTTTATCAGACGGTC
LOC_Os03g55970
Os.17075.1.S1_at--1038--7111Chr03:31799634..31799658 (25 bp)
GTCATGATACAATATACCGAGAAGA
LOC_Os03g55970
Os.17075.1.S1_at--668--791Chr03:31799435..31799459 (25 bp)
ATGTGTGTAAATACCTCCATGGCAG
LOC_Os03g55970
Os.17075.1.S1_at--724--9971Chr03:31799424..31799448 (25 bp)
TACCTCCATGGCAGTATTGCATTGA
LOC_Os03g55970
Target Sequence 
ATTTGCAAATGTTCACTTGTGGTTGAGNCTGGATTTCACAAATCATCTTCGAGGACATAAAATTATACCGTCTTTTCGGT
GGAAGATAGGCTATGATTCAACTGATCCCACTCTGTATACAACCCAAAACGGCACACAGCAATATTTTGTTTATCAGACG
GTCATGATACAATATACCGAGAAGAAACTGAACTGACAATGTAACTACATNACAAATTTACAACAGAACAATGTGCCAAA
TTACTAGATGTACCCTCCTTGAGCTGGTTTTGTAACTGTTTTTGGGAGCCTATTTGTAGAAAATCATACAAACTTATATA
TTACAATAGATGCTTGATTGGTTGGTTGGTTTTTGAGATATGTGTGTAAATACCTCCATGGCAGTATTGCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis