Browse Element(s) Details


Os.17129.1.S1_at

Description gb:AK065850.1
DB_XREF= gi:32975868
TID=Os.17129.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041F13, full insert sequence.
FL= gb:AK065850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3864011/11Trypsin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed
LOC_Os04g38610Os.10386.1.S1_at10/114+22720341..22723231Ran-interacting Mob1 protein, expressed
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0030163biological_processprotein catabolism
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17129.1.S1_at--149--311Chr04:22740069..22740093 (25 bp)
ATAGCTCCTCAGTTAATTCAGTTTG
LOC_Os04g38640
Os.17129.1.S1_at--335--2431Chr04:22740638..22740658 (21 bp)
AAAAGTTCGCCGTGCTGGCTTGAAT
LOC_Os04g38640
Os.17129.1.S1_at--732--6851Chr04:22740664..22740688 (25 bp)
GTTTGCTCCAGATCCAATCGCATAT
LOC_Os04g38640
Os.17129.1.S1_at--953--9651Chr04:22740688..22740712 (25 bp)
TCAGCTTAATGTTCGCACTGGATCT
LOC_Os04g38640
Os.17129.1.S1_at--591--7371Chr04:22741121..22741145 (25 bp)
GGAGGTAACCTTGCCTTTAGAAGAG
LOC_Os04g38640
Os.17129.1.S1_at--1084--9991Chr04:22741166..22741190 (25 bp)
TAGCAGTAAGTTGGCATCCCCGATC
LOC_Os04g38640
Os.17129.1.S1_at--341--551Chr04:22741181..22741205 (25 bp)
ATCCCCGATCTATTGCTTTTGTAAA
LOC_Os04g38640
Os.17129.1.S1_at--1151--10271Chr04:22741213..22741237 (25 bp)
TTTGCTGAGCTGTTCATGCTTCCAA
LOC_Os04g38640
Os.17129.1.S1_at--481--4111Chr04:22741275..22741299 (25 bp)
CGAATCGATTCAGAACTCTCTCTCT
LOC_Os04g38640
Os.17129.1.S1_at--631--9491Chr04:22741312..22741336 (25 bp)
TCTCCATAGATGGTGCCTCAATATA
LOC_Os04g38640
Os.17129.1.S1_at--565--6071Chr04:22741342..22741366 (25 bp)
GAGTTTCTGCTTATTATACGTCATA
LOC_Os04g38640
Target Sequence 
ATAGCTCCTCAGTTAATTCAGTTTGGAAAAGTTCGCCGTGCTGGCTTGAATGTGGAGTTTGCTCCAGATCCAATCGCATA
TCAGCTTAATGTTCGCACTGGATCTNTAATATTGCAGGTTCCTGGGGGCAGTGCTGCAGCCNNANNNGGTCTTGTTCCTA
CCAGTAGGGGTTTTGCTGGTANCATTGTTCTTGNTGATGTCATTGTTNCCNGTGGACGGTAAACCTATCAAAGGCAAATC
TGATCTATCGAGGGTTCTGGATGNTTATGGCGTTGGAGACAAGGTGAGCTTGACAATCCAAAGAGGCGCTGAANCTCTGG
AGGTAACCTTGCCTTTAGAAGAGGCAAGTATCTGATGTATTTCTAGCAGTAAGTTGGCATCCCCGATCTATTGCTTTTGT
AAATATCGCATTTGCTGAGCTGTTCATGCTTCCAACCTGAAGCCTTTTTCGTTTGTTTCTTAAATACTAAANCGAATCGA
TTCAGAACTCTCTCTCTCTCTCTCTCTCCTCTCCATAGATGGTGCCTCAATATACATCAGAGTTTCTGCTTATTATACGT
CATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis