Browse Element(s) Details

Os.17135.1.S1_at

Description

gb:AK108318.1
DB_XREF= gi:32993527
TID=Os.17135.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lysophosphatidic acid acyltransferase (OSJNBa0017E08.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-G11, full insert sequence.
FL= gb:AK108318.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g35390	11/11	1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35436	1/11	Rf1 protein, mitochondrial precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g35350	OsAffx.13097.1.S1_s_at	11/11	10	+	18563737..18567735	transposon protein, putative, Mutator sub-class
LOC_Os10g35350	Os.46613.1.S2_at	4/11	10	+	18563737..18567735	transposon protein, putative, Mutator sub-class
LOC_Os10g35360	OsAffx.7995.1.S1_x_at	11/11	10	+	18568978..18569400	hypothetical protein
LOC_Os10g35360	OsAffx.7995.1.S1_at	11/11	10	+	18568978..18569400	hypothetical protein
LOC_Os10g35370	Os.9230.1.S1_x_at	11/11	10	+	18570695..18574407	Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370	Os.46805.2.S1_at	1/11	10	+	18570695..18574407	Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370	Os.46805.2.S1_x_at	1/11	10	+	18570695..18574407	Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35380	Os.46651.1.S1_at	11/11	10	+	18576917..18585701	expressed protein
LOC_Os10g35380	Os.46550.2.S1_x_at	2/11	10	+	18576917..18585701	expressed protein
LOC_Os10g35390	Os.17135.1.S1_at	11/11	10	+	18587440..18590746	1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390	Os.46550.2.S1_x_at	3/11	10	+	18587440..18590746	1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390	Os.46550.1.A1_at	3/11	10	+	18587440..18590746	1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400	Os.31312.2.S1_x_at	1/11	10	+	18593570..18596685	retrotransposon protein, putative, unclassified
LOC_Os10g35412	NA	NA	10	+	18597495..18601748	retrotransposon protein, putative, unclassified
LOC_Os10g35424	Os.11724.2.S1_s_at	1/11	10	+	18603063..18603852	hypothetical protein
LOC_Os10g35436	Os.46550.1.A1_at	11/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.47809.1.S1_s_at	11/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.47809.1.S1_a_at	11/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.46550.2.S1_x_at	9/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.46550.2.S1_at	6/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.46127.1.S1_x_at	5/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.46382.2.S1_x_at	4/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.53725.1.S1_x_at	1/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436	Os.17135.1.S1_at	1/11	10	+	18606065..18624126	Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0008415	molecular_function	acyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17135.1.S1_at--817--807	1	Chr10:18589409..18589433 (25 bp)	GGAGCATCTGTATTTTTCTTTCCAG	LOC_Os10g35390
Os.17135.1.S1_at--902--133	1	Chr10:18589581..18589605 (25 bp)	AGAGGTGCATTCAGTGTGGCTACAA	LOC_Os10g35390
Os.17135.1.S1_at--990--983	1	Chr10:18589601..18589625 (25 bp)	TACAAAGACCGGTGCTCCTGTGATA	LOC_Os10g35390
Os.17135.1.S1_at--72--741	1	Chr10:18589620..18589644 (25 bp)	GTGATACCTATTACTCTTCTCGGGA	LOC_Os10g35390
Os.17135.1.S1_at--649--211	1	Chr10:18589644..18589668 (25 bp)	ACAGGGAAACTGATGCCTTCTGGAA	LOC_Os10g35390
Os.17135.1.S1_at--937--529	1	Chr10:18589671..18589695 (25 bp)	GAAGGCATCCTTAATTCAGGTTCAG	LOC_Os10g35390
Os.17135.1.S1_at--263--705	1	Chr10:18589695..18589719 (25 bp)	GTAAAGCTCATTATTCACCATCCAA	LOC_Os10g35390
Os.17135.1.S1_at--272--105	1	Chr10:18589762..18589786 (25 bp)	AGGTGATAGCTGACACTCTTATTCT	LOC_Os10g35390
Os.17135.1.S1_at--1138--823	1	Chr10:18589851..18589875 (25 bp)	GGCACAGACAGGCTTTCAAGGCTAA	LOC_Os10g35390
Os.17135.1.S1_at--427--385	1	Chr10:18590606..18590630 (25 bp)	CTGATGTAGTTTACTTTTGCCCCTA	LOC_Os10g35390
Os.17135.1.S1_at--462--95	2	Chr10:18614694..18614718 (25 bp)	AGGAGAAGTTGCTCGTTTCATTAAA	LOC_Os10g35436

Target Sequence

GGAGCATCTGTATTTTTCTTTCCAGAGGGGACTAGAAGCAAAGATGGAAAGCTAGGTGCATTTAAGAGAGGTGCATTCAG
TGTGGCTACAAAGACCGGTGCTCCTGTGATACCTATTACTCTTCTCGGGACAGGGAAACTGATGCCTTCTGGAATGGAAG
GCATCCTTAATTCAGGTTCAGTAAAGCTCATTATTCACCATCCAATTGAAGGGAATGATGCTGAGAAATTATGTTCTGAA
GCAAGGAAGGTGATAGCTGACACTCTTATTCTAAACGGTTATGGAGTGCACNTAAAGAAAGATGGTGTTTTTTTTTATTA
TATGGAACCTATTCAAAGGCACAGACAGGCTTTCAAGGCTAAGCTTGTTACAGACTGAAGAGAGAAGAAATACAAGACTG
TCCATTGTTAGTCAGATTTGTAAAAATAGACTCTGATGTAGTTTACTTTTGCCCCTATTTTATTTTTAACAATACAAATA
TATAACAGATCCTAAGAACTTATCTTAATTTAGGAGAAGTTGCTCGTTTCATTAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis