Browse Element(s) Details


Os.172.1.S1_a_at

Description gb:AK122053.1
DB_XREF= gi:37991699
TID=Os.172.1
CNT=71
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for chitinase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114G24, full insert sequence.
FL= gb:AK122053.1 gb:AB027422.1 gb:AB027421.1 gb:AK073757.1 gb:D55714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4750011/11Xylanase inhibitor protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47450OsAffx.19423.1.S1_s_at11/1111+28141521..28144519hypothetical protein
LOC_Os11g47450OsAffx.19423.1.S1_at10/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.29823.2.S1_x_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.32680.1.S1_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47460Os.10174.1.S1_at11/1111+28145896..28147303myb family transcription factor, putative, expressed
LOC_Os11g47470Os.27639.1.S1_x_at2/1111+28150033..28153819retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g47480OsAffx.19424.1.S1_at10/1111+28155307..28157423hypothetical protein
LOC_Os11g47490OsAffx.19425.1.S1_at11/1111+28160381..28161239Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os11g47494NANA11+28162148..28162654hypothetical protein
LOC_Os11g47500Os.172.1.S1_a_at11/1111+28164543..28166059Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47510Os.4670.1.S1_at11/1111+28169475..28170818Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47520Os.25636.1.S1_at11/1111+28172142..28173317Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47530Os.169.1.S1_at11/1111+28175114..28176274Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47550Os.9964.1.S1_at11/1111+28177983..28179140Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.172.1.S1_a_at--256--1811Chr11:28165282..28165306 (25 bp)
ACCCCGACGGGCAGATCTTCCTGGG
LOC_Os11g47500
Os.172.1.S1_a_at--633--3731Chr11:28165120..28165144 (25 bp)
CTCACTACGGCCGATACGTCAAGGA
LOC_Os11g47500
Os.172.1.S1_a_at--536--9931Chr11:28165115..28165139 (25 bp)
TACGGCCGATACGTCAAGGACTTGG
LOC_Os11g47500
Os.172.1.S1_a_at--55--6491Chr11:28165108..28165132 (25 bp)
GATACGTCAAGGACTTGGCTTGATA
LOC_Os11g47500
Os.172.1.S1_a_at--1105--2631Chr11:28165063..28165087 (25 bp)
AACCAATAATTACTTGAGCCCGTGC
LOC_Os11g47500
Os.172.1.S1_a_at--393--351Chr11:28165058..28165082 (25 bp)
ATAATTACTTGAGCCCGTGCATGCA
LOC_Os11g47500
Os.172.1.S1_a_at--1017--371Chr11:28165020..28165044 (25 bp)
ATCACTATCTCAGTAATTACGGCGT
LOC_Os11g47500
Os.172.1.S1_a_at--1151--3131Chr11:28165006..28165030 (25 bp)
AATTACGGCGTCATGTGTTTGATAT
LOC_Os11g47500
Os.172.1.S1_a_at--806--3931Chr11:28165001..28165025 (25 bp)
CGGCGTCATGTGTTTGATATAGGAA
LOC_Os11g47500
Os.172.1.S1_a_at--34--8151Chr11:28164980..28165004 (25 bp)
GGAAAGTAATCCCTACGTAGGCCAT
LOC_Os11g47500
Os.172.1.S1_a_at--148--9771Chr11:28164974..28164998 (25 bp)
TAATCCCTACGTAGGCCATTCTCAA
LOC_Os11g47500
Target Sequence 
ACCCCGACGGGCAGATCTTCCTGGGGGTCGTCGCGGCCAACTTGACGGGGAAGAACGACATGGTCGCCGTCGGCGAGCTC
CGCGACAAGCTGCTGCCGGCGGTGCAGAACACGGATACGTACGGAGGAGTGATGCTCTGGAACAGCTACTACGACTCGCT
CACTCACTACGGCCGATACGTCAAGGACTTGGCTTGATATAATTAATTAAACTCAAATCAACCAATAATTACTTGAGCCC
GTGCATGCATGCATGCAGCTCAATCACTATCTCAGTAATTACGGCGTCATGTGTTTGATATAGGAAAGTAATCCCTACGT
AGGCCATTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.172.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis