Browse Element(s) Details


Os.17219.2.S1_x_at

Description gb:AK066860.1
DB_XREF= gi:32976878
TID=Os.17219.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088K08, full insert sequence.
FL= gb:AK066860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g096904/11F-box domain containing protein
LOC_Os11g096803/11expressed protein
LOC_Os11g099602/11hypothetical protein
LOC_Os11g099701/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative
LOC_Os11g09710OsAffx.30906.1.S1_at11/1111+5178191..5179575expressed protein
LOC_Os11g09720Os.46053.2.S1_x_at8/1111+5180249..5183483transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09730NANA11+5187897..5188196retrotransposon protein, putative, unclassified
LOC_Os11g09740OsAffx.7052.1.S1_at11/1111+5193988..5195544hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17219.2.S1_x_at--271--1451Chr11:5167003..5167027 (25 bp)
AGAAGGAGTTTCTCGACCGTCTGCT
NONE
Os.17219.2.S1_x_at--701--5631Chr11:5166953..5166977 (25 bp)
GACACGTGCGTGCTAATGTTCGATT
NONE
Os.17219.2.S1_x_at--805--5431Chr11:5166891..5166915 (25 bp)
GAACCTATGGTTCAGGCATGCTCTT
NONE
Os.17219.2.S1_x_at--309--631Chr11:5166874..5166898 (25 bp)
ATGCTCTTATCCACAAGGCTCGGTT
NONE
Os.17219.2.S1_x_at--37--1911Chr11:5166838..5166862 (25 bp)
ACGTCGGATACTACCACTCATTTGT
NONE
Os.17219.2.S1_x_at--268--1313Chr11:5166810..5166834 (25 bp)
AGATGAGATGCCACTTGTCTCCCAG
NONE
Os.17219.2.S1_x_at--1110--1493Chr11:5166787..5166811 (25 bp)
AGCACTTGACGAGGCTACAGCTTCG
NONE
Os.17219.2.S1_x_at--538--10152Chr11:5170982..5171006 (25 bp)
TATCCCGAGTCTTGTTTCTCTGCAG
LOC_Os11g09690
Os.17219.2.S1_x_at--47--3532Chr11:5166557..5166581 (25 bp)
CATGACAGGGCTCCAGTGCTTGAGA
LOC_Os11g09680
Os.17219.2.S1_x_at--825--2032Chr11:5170869..5170893 (25 bp)
ACTATTGCATTTGGTCTGACTCTGG
LOC_Os11g09690
Os.17219.2.S1_x_at--154--7351NONE
GTGAACGTGGATCGTCTGGTAAACA
NONE
Target Sequence 
AGAAGGAGTTTCTCGACCGTCTGCTGCTACTCCGTGATGGAGCCCCTCTCGACACGTGCGTGCTAATGTTCGATTATTAC
GGCGACATGGACATCGAGGACACAGCTCGGGTGAACCTATGGTTCAGGCATGCTCTTATCCACAAGGCTCGGTTCCTCTG
GCTCGACGTCGGATACTACCACTCATTTGTGATAGATGAGATGCCACTTGTCTCCCAGCACTTGACGAGGCTACAGCTTC
GAAATATAAGGTGAGATATCTCGGGTACGTATCGCTATCCCGAGTCTTGTTTCTCTGCAGCTGGATGGCTTCCATGACAG
GGCTCCAGTGCTTGAGAGGATGCCATCATTAGTTGATGCATTTGTTGGAGTCCTCAACTGGACTAAAGACTATTGCATTT
GGTCTGACTCTGGGGATTGTGGTCATGAGAACTGCGAATCTTGTTACGGTATCAAGGACAACAATTGTGTGCTTTTGGAA
GGTTTATCGGAAGCTAAGACGTTGGGGCTGATAAGTGAACGTGGATCGTCTGGTAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17219.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis