Browse Element(s) Details


Os.17232.1.S2_at

Description gb:AK069838.1
DB_XREF= gi:32979862
TID=Os.17232.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023033M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023033M17, full insert sequence.
FL= gb:AK069838.1 gb:AK121197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5130011/11L-ascorbate peroxidase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51240Os.5617.1.S1_at11/114+30142907..30144569EF hand family protein, expressed
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17232.1.S2_at--135--311Chr04:30168582..30168606 (25 bp)
ATAGCCGACAAGGATTGCCGCCCAT
LOC_Os04g51300
Os.17232.1.S2_at--202--4531Chr04:30168598..30168622 (25 bp)
GCCGCCCATGGGTCGAGAAGTATCA
LOC_Os04g51300
Os.17232.1.S2_at--1095--1391Chr04:30168634..30168658 (25 bp)
AGACGGTCTCTCGAACTGACTACGA
LOC_Os04g51300
Os.17232.1.S2_at--34--6171Chr04:30168801..30168824 (24 bp)
GAGGTTGACCTGATAACCACGCTCA
LOC_Os04g51300
Os.17232.1.S2_at--141--2191Chr04:30168824..30168848 (25 bp)
ACAAAGCTGAGCTCCCTTGGGCAGA
LOC_Os04g51300
Os.17232.1.S2_at--930--6491Chr04:30168916..30168940 (25 bp)
GATAGTTTCCTGATCATCTCTCAGT
LOC_Os04g51300
Os.17232.1.S2_at--1075--451Chr04:30168931..30168955 (25 bp)
ATCTCTCAGTCTCGGTGATGCTGAT
LOC_Os04g51300
Os.17232.1.S2_at--244--5371Chr04:30168964..30168988 (25 bp)
GAAGAGCTTCATTTGTTTGCCTAAG
LOC_Os04g51300
Os.17232.1.S2_at--259--8271Chr04:30169005..30169029 (25 bp)
GGCAGTGACATTCCGACATTTTTAC
LOC_Os04g51300
Os.17232.1.S2_at--585--6251Chr04:30169054..30169078 (25 bp)
GATGGTTTAGATTCACTGTTCCCTT
LOC_Os04g51300
Os.17232.1.S2_at--732--2491Chr04:30169207..30169231 (25 bp)
AACAGTTCTCCAATATACCACCATA
LOC_Os04g51300
Target Sequence 
ATAGCCGACAAGGATTGCCGCCCATGGGTCGAGAAGTATCAACGCAGTCGCGAGACGGTCTCTCGAACTGACTACGAGGT
TGACCTGATAACCACGCTCACAAAGCTGAGCTCCCTTGGGCAGAAGATAAACTACGAGGCCTACACGTACCCTAAGCAAA
AGATTGACTTGGGTAAATTGAAATTGTGATGGATAGTTTCCTGATCATCTCTCAGTCTCGGTGATGCTGATACAGTAACG
AAGAGCTTCATTTGTTTGCCTAAGAAGAGTGATTTGATTTGGCAGTGACATTCCGACATTTTTACACGGCAATAAGTACG
GCATGTATAGATGGTTTAGATTCACTGTTCCCTTCGCTCTTTTCTGAACTTCAAGAATCAGACATGATGATTTCCATGAG
TTGTGTTCTGTAAATTCTCTTACTTGTATAATGTGAAGAGGCAATAGCAGCCAAGTGGAGTAATAGACAATACTGTTTCT
TCAACAGTTCTCCAATATACCACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17232.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis