Browse Element(s) Details


Os.17258.1.S1_at

Description gb:AK111092.1
DB_XREF= gi:32996301
TID=Os.17258.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G03, full insert sequence.
FL= gb:AK111092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g525307/11heavy metal-associated domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed
LOC_Os04g52510OsAffx.2198.3.S1_at11/114+31004330..31005478hypothetical protein
LOC_Os04g52520OsAffx.4156.1.S1_at11/114+31006042..31011501hypothetical protein
LOC_Os04g52520Os.54371.1.S1_x_at1/114+31006042..31011501hypothetical protein
LOC_Os04g52530Os.17258.1.S1_at7/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52530OsAffx.23171.1.S1_at3/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed
LOC_Os04g52550Os.55120.1.S1_at10/114+31025382..31030546Piwi domain containing protein, expressed
LOC_Os04g52560OsAffx.14378.1.S1_at11/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52560Os.53329.1.S1_x_at10/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52570Os.54626.1.S1_at11/114+31035777..31038868expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17258.1.S1_at--762--4651Chr04:31012591..31012615 (25 bp)
GCGTCGTCCAAGGACACGGTCACAG
LOC_Os04g52530
Os.17258.1.S1_at--461--2931Chr04:31012600..31012624 (25 bp)
AAGGACACGGTCACAGCCAAGAACA
LOC_Os04g52530
Os.17258.1.S1_at--744--2151Chr04:31012612..31012636 (25 bp)
ACAGCCAAGAACAGCGACGACGTCG
LOC_Os04g52530
Os.17258.1.S1_at--347--7171Chr04:31012633..31012657 (25 bp)
GTCGACGGCGACAAATCCGAACCGG
LOC_Os04g52530
Os.17258.1.S1_at--679--10131Chr04:31012765..31012789 (25 bp)
TATGCCGGAGGATACTACCCGATCC
LOC_Os04g52530
Os.17258.1.S1_at--128--6191Chr04:31012855..31012879 (25 bp)
GAGGACTACTTCAACGAGGACAACA
LOC_Os04g52530
Os.17258.1.S1_at--449--951Chr04:31012871..31012895 (25 bp)
AGGACAACACCGTCGGCTGCCACGT
LOC_Os04g52530
Os.17258.1.S1_at--993--9192Chr04:31012888..31012912 (25 bp)
TGCCACGTCATGTGAAACCGCAAAA
NONE
Os.17258.1.S1_at--129--8971Chr04:31012900..31012924 (25 bp)
TGAAACCGCAAAACACGCCAAGCTC
NONE
Os.17258.1.S1_at--1139--3471Chr04:31012939..31012963 (25 bp)
CATGTACAACCGATCGATCACCAAG
NONE
Os.17258.1.S1_at--632--1411Chr04:31012962..31012986 (25 bp)
AGAAATCAGCGACCACCATTCGTTT
NONE
Target Sequence 
GCGTCGTCCAAGGACACGGTCACAGCCAAGAACAGCGACGACGTCGACGGCGACAAATCCGAACCGGCGGCGGTGGCGGT
GGAGTACCAGTACCACCACCACTACAGCCGGCCGGAGCCGGCCATGGTGGTGCCGGTTCACCTCCCGTACTACGCCGCGA
ACGCGACGCCGTACTATGCCGGAGGATACTACCCGATCCCGCCGCCGATGCCGGCGATGCTCCGTCACCCTCCTCAGCTC
CGGCCGCAGCCGTCACGCTTCGACGAGGACTACTTCAACGAGGACAACACCGTCGGCTGCCACGTCATGTGAAACCGCAA
AACACGCCAAGCTCCTCCTGGCTCCCGCCATGTACAACCGATCGATCACCAAGAAATCAGCGACCACCATTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis