Browse Element(s) Details


Os.17401.1.S1_at

Description gb:AK101077.1
DB_XREF= gi:32986286
TID=Os.17401.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024C11, full insert sequence.
FL= gb:AK101077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1921011/11WD-repeat protein 26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19160OsAffx.24321.1.S1_at11/112+11175847..11176164hypothetical protein
LOC_Os02g19170Os.50774.1.S1_at11/112+11180100..11182660expressed protein
LOC_Os02g19180OsAffx.2680.1.S1_at10/112+11182943..11184386Zinc finger, C2H2 type family protein
LOC_Os02g19200Os.27049.1.S2_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19200Os.27049.1.S1_at11/112+11188427..11193872F-box domain containing protein, expressed
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19220Os.27045.1.S1_a_at11/112+11209105..11217046expressed protein
LOC_Os02g19230OsAffx.12116.1.S1_at11/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_x_at4/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_at2/112+11223363..11225006hypothetical protein
LOC_Os02g19240OsAffx.24322.1.S1_at11/112+11227245..11227445hypothetical protein
LOC_Os02g19250OsAffx.31133.2.S1_at1/112+11227974..11230703transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17401.1.S1_at--179--6611Chr02:11205087..11205111 (25 bp)
GATTGTCACGCATCTTTTCCTATCA
LOC_Os02g19210
Os.17401.1.S1_at--842--10191Chr02:11205122..11205146 (25 bp)
TATATCTTGTCCTGTCTTCTGCAAC
LOC_Os02g19210
Os.17401.1.S1_at--106--5151Chr02:11205142..11205166 (25 bp)
GCAACTTCCGTAACCTCAAAATCTG
LOC_Os02g19210
Os.17401.1.S1_at--538--2171Chr02:11205239..11205263 (25 bp)
ACACCGGCACGGTCAACTGTGTGAG
LOC_Os02g19210
Os.17401.1.S1_at--379--5891Chr02:11205261..11205285 (25 bp)
GAGCTGGAATCCTGCGAATCCGCAC
LOC_Os02g19210
Os.17401.1.S1_at--59--3051Chr02:11205277..11205301 (25 bp)
AATCCGCACATGCTTGCATCTGCAA
LOC_Os02g19210
Os.17401.1.S1_at--1049--8431Chr02:11205478..11205502 (25 bp)
TGGCATTTGTAAATCCCCTTTTCCT
LOC_Os02g19210
Os.17401.1.S1_at--731--10291Chr02:11205507..11205531 (25 bp)
TTTCCTTTAGTTTCCTATCCATCAG
LOC_Os02g19210
Os.17401.1.S1_at--250--10151Chr02:11205522..11205546 (25 bp)
TATCCATCAGGGAGGACGCCATAGT
LOC_Os02g19210
Os.17401.1.S1_at--900--3891Chr02:11205585..11205609 (25 bp)
CTGGGTTTCATGCACGATCTCTCAT
LOC_Os02g19210
Os.17401.1.S1_at--885--6871Chr02:11205610..11205634 (25 bp)
GTATTCCATCTTACTGTTTGTCACA
LOC_Os02g19210
Target Sequence 
GATTGTCACGCATCTTTTCCTATCATCTGCATCTATATATCTTGTCCTGTCTTCTGCAACTTCCGTAACCTCAAAATCTG
GAATAATTTTCCTACTTCAGATCTATATATGGCATAGAGCTACTGGAGATCTTNATNGAAACTCNTGCCTGGTCACACCG
GCACGGTCAACTGTGTGAGCTGGAATCCTGCGAATCCGCACATGCTTGCATCTGCAAGTGATGATCACNCAATTCGTATA
TGGGGTTTAAAGAAGNCCAATCTGAAGCGCNAAGGATGTTGGCAGCANCAATGGGATCTATGCNAATGGTAATACACCCA
GCNATGGTGTGGTACACCAGTGCAACGGGAACAGCAGCAAATGAACATGGCTTGCTAACCNATGGATGGATGACTGGCAT
TTGTAAATCCCCTTTTCCTTCCCTTTCCTTTAGTTTCCTATCCATCAGGGAGGACGCCATAGTAAAACNAAGCTCTGCAG
CACNNANGTGTGGGGAAACCTGCTGGGTTTCATGCACGATCTCTCATGTATTCCATCTTACTGTTTGTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis