Browse Element(s) Details


Os.17572.1.S1_at

Description gb:AK070523.1
DB_XREF= gi:32980547
TID=Os.17572.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055J24, full insert sequence.
FL= gb:AK070523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0250011/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02434OsAffx.3704.1.S1_at11/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02434Os.38395.5.S1_at2/114+871459..874803Transposable element protein, putative, MuDR, expressed
LOC_Os04g02450OsAffx.25839.1.S1_at11/114+879014..881296Leucine Rich Repeat family protein
LOC_Os04g02460Os.52238.1.S1_at2/114+884186..885139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02470NANA4+886002..886529expressed protein
LOC_Os04g02480OsAffx.13620.1.S1_at11/114+889546..889890hypothetical protein
LOC_Os04g02490Os.10659.1.S1_at5/114+890345..891202hypothetical protein
LOC_Os04g02490Os.14980.1.A1_at3/114+890345..891202hypothetical protein
LOC_Os04g02490Os.10659.1.S1_s_at3/114+890345..891202hypothetical protein
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed
LOC_Os04g02520OsAffx.13622.1.S1_at11/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520Os.54925.1.S1_at2/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520OsAffx.28137.1.S1_at1/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02530Os.27102.1.S1_x_at11/114+924992..927884expressed protein
LOC_Os04g02530Os.46444.1.S1_x_at1/114+924992..927884expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17572.1.S1_at--1008--5371Chr04:900011..900035 (25 bp)
GAAGAATCATGATCTTTGCCCGCCC
LOC_Os04g02500
Os.17572.1.S1_at--503--8171Chr04:900086..900110 (25 bp)
GGAACATGCCATGCCATGATCTTGT
LOC_Os04g02500
Os.17572.1.S1_at--749--10811Chr04:900107..900131 (25 bp)
TTGTCACGCTCTTTAATCCTGATGT
LOC_Os04g02500
Os.17572.1.S1_at--904--8271Chr04:900139..900163 (25 bp)
GGCATCTCCTGCGTTCTCATATGAA
LOC_Os04g02500
Os.17572.1.S1_at--1047--1191Chr04:900221..900245 (25 bp)
AGTTTCCCCTACACATGCTGGATAT
LOC_Os04g02500
Os.17572.1.S1_at--732--9391Chr04:900258..900282 (25 bp)
TCGTACATTCTGTCTTAAGGGCTCA
LOC_Os04g02500
Os.17572.1.S1_at--651--2671Chr04:900287..900311 (25 bp)
AAGCCCATGGGACACCTTTGTATTA
LOC_Os04g02500
Os.17572.1.S1_at--923--6971Chr04:900331..900355 (25 bp)
GTACCTTTCAATTCAGACCTGGGAT
LOC_Os04g02500
Os.17572.1.S1_at--167--9431Chr04:900370..900394 (25 bp)
TCGTGGTCTGGATCATGTCTGGCAA
LOC_Os04g02500
Os.17572.1.S1_at--687--4931Chr04:900407..900431 (25 bp)
GCTTGTCCTTGAGGGCACTATTCAA
LOC_Os04g02500
Os.17572.1.S1_at--1041--111Chr04:900426..900450 (25 bp)
ATTCAACTGTAGCTGGTTCCTTGCC
LOC_Os04g02500
Target Sequence 
GAAGAATCATGATCTTTGCCCGCCCAAGAGTGATTGCACTGAAGGAAATGGTCCTGTAGAAGAGAATTAATTTTGGGAAC
ATGCCATGCCATGATCTTGTCACGCTCTTTAATCCTGATGTGGATGGTGGCATCTCCTGCGTTCTCATATGAACATGAAA
TGTTGAAATGTTAATTGTATGGAGTCGAGGGTACATTGGAACAGTAACTCAGTTTCCCCTACACATGCTGGATATGGAAC
TTTTGATTCGTACATTCTGTCTTAAGGGCTCAGACAAAGCCCATGGGACACCTTTGTATTATTGTGTTGGCTTTTATTTA
GTACCTTTCAATTCAGACCTGGGATTGCATCTGGNTAACTCGTGGTCTGGATCATGTCTGGCAAAATTTCTAGAAAGCTT
GTCCTTGAGGGCACTATTCAACTGTAGCTGGTTCCTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis