Browse Element(s) Details


Os.17630.1.S1_s_at

Description gb:AK067004.1
DB_XREF= gi:32977022
TID=Os.17630.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091F09, full insert sequence.
FL= gb:AK067004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5667011/11Glycosyl hydrolase family 47 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein
LOC_Os01g56660OsAffx.21591.1.S1_at11/111+33020608..33023334hypothetical protein
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed
LOC_Os01g56680Os.5378.1.S1_at11/111+33034766..33036132Photosystem II reaction centre W protein containing protein, expressed
LOC_Os01g56690NANA1+33041627..33043265Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g56700OsAffx.11626.1.S1_at5/111+33048293..33048628hypothetical protein
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006487biological_processprotein amino acid N-linked glycosylation
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17630.1.S1_s_at--344--3611Chr01:33034823..33034847 (25 bp)
CATTGTGGCAACTGCTGAGTCTGTA
LOC_Os01g56670
Os.17630.1.S1_s_at--360--8751Chr01:33034844..33034868 (25 bp)
TGTAGGGACTGATACTGCCGGCGCC
LOC_Os01g56670
Os.17630.1.S1_s_at--1000--9251Chr01:33034872..33034896 (25 bp)
TCCCACCCCGAGGATCTTGTTAAGG
LOC_Os01g56670
Os.17630.1.S1_s_at--115--1291Chr01:33034939..33034963 (25 bp)
AGATCGCTTCTCAGGGTAGTCAACC
LOC_Os01g56670
Os.17630.1.S1_s_at--747--1951Chr01:33035014..33035038 (25 bp)
ACTGGATACCATCATTTCAGGGCTT
LOC_Os01g56670
Os.17630.1.S1_s_at--169--2391Chr01:33035140..33035164 (25 bp)
AAAAATCTCGCAATGGGACTACCCT
LOC_Os01g56670
Os.17630.1.S1_s_at--748--7611Chr01:33035154..33035178 (25 bp)
GGGACTACCCTTGAGTGGATCTGTG
LOC_Os01g56670
Os.17630.1.S1_s_at--602--7971Chr01:33035170..33035194 (25 bp)
GGATCTGTGGTCTCGATACACAACA
LOC_Os01g56670
Os.17630.1.S1_s_at--803--2591Chr01:33035243..33035267 (25 bp)
AACGAGCATTCCTTGATTCATTCTG
LOC_Os01g56670
Os.17630.1.S1_s_at--573--6791Chr01:33035267..33035291 (25 bp)
GTTTGTAACTTTGTACTGGTCCGAT
LOC_Os01g56670
Os.17630.1.S1_s_at--69--7011Chr01:33035279..33035303 (25 bp)
GTACTGGTCCGATAGATTCTTCTGA
LOC_Os01g56670
Target Sequence 
CATTGTGGCAACTGCTGAGTCTGTAGGGACTGATACTGCCGGCGCCTCATCCCACCCCGAGGATCTTGTTAAGGAAACTG
AGAGCGTCTCTGAACAGAAAGAAATCAATGACAAAGAGATCGCTTCTCAGGGTAGTCAACCGACCGAAGGAAGATACCTG
ACCTAATGTAGGAACGAAAACTTTCACTTAAACTGGATACCATCATTTCAGGGCTTACCATATTACAAGTCTGCACGTCA
GGTTACNAAAACAACAAGTGTTGATACAAGGCCCATAGATCAGTACCTCCTGACCACAGTTGAATTATAGTGAAAATGAA
AAATCTCGCAATGGGACTACCCTTGAGTGGATCTGTGGTCTCGATACACAACATTTGGATTTACCACAAGGCATCAGCTG
TGTTCTTTCTGACAAATTTAGAACGAGCATTCCTTGATTCATTCTGTTTGTAACTTTGTACTGGTCCGATAGATTCTTCT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17630.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis