Browse Element(s) Details


Os.17766.1.S1_at

Description gb:AK065224.1
DB_XREF= gi:32975242
TID=Os.17766.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G23, full insert sequence.
FL= gb:AK065224.1 gb:AK100258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1212011/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g12130NANA6+6490223..6490714hypothetical protein
LOC_Os06g12140OsAffx.4808.1.S1_at10/116+6491885..6493715hypothetical protein
LOC_Os06g12140OsAffx.16999.1.S1_at2/116+6491885..6493715hypothetical protein
LOC_Os06g12150Os.56273.1.S1_at11/116+6494003..6496899Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os06g12160Os.18031.1.S1_at11/116+6502744..6513200AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0016049biological_processcell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17766.1.S1_at--1024--2651Chr06:6483562..6483586 (25 bp)
AAGCCGCCCCAGAATGTCAACGGTG
LOC_Os06g12120
Os.17766.1.S1_at--678--10011Chr06:6483527..6483551 (25 bp)
TAGAAGACGGTATCGCGGAGCACTG
LOC_Os06g12120
Os.17766.1.S1_at--431--5371Chr06:6483487..6483511 (25 bp)
GAAGACGATTGTGCAGGCAAGCCTG
LOC_Os06g12120
Os.17766.1.S1_at--1001--2091Chr06:6483454..6483478 (25 bp)
ACAGGGCGTTTCTGAGGCTCGCAAT
LOC_Os06g12120
Os.17766.1.S1_at--80--3011Chr06:6483432..6483456 (25 bp)
AATGACTCTGTTGCAAATCTCCCTC
LOC_Os06g12120
Os.17766.1.S1_at--858--31Chr06:6483400..6483424 (25 bp)
ATTGTCTGGTCCAAGGTGACTGCCA
LOC_Os06g12120
Os.17766.1.S1_at--347--7771Chr06:6483386..6483410 (25 bp)
GGTGACTGCCACCTTAAGGACTATG
LOC_Os06g12120
Os.17766.1.S1_at--1003--5471Chr06:6483334..6483358 (25 bp)
GAACTTAGACAGAACACTTGCCATT
LOC_Os06g12120
Os.17766.1.S1_at--192--9651Chr06:6483226..6483250 (25 bp)
TCACTACTAGACACAGGGCTTTCAG
LOC_Os06g12120
Os.17766.1.S1_at--838--791Chr06:6483156..6483180 (25 bp)
ATGTGGTTGTGCTACTCCAGGATCA
LOC_Os06g12120
Os.17766.1.S1_at--692--2891Chr06:6483076..6483100 (25 bp)
AAGGTGAGCTGTAACCTATTGCCAG
LOC_Os06g12120
Target Sequence 
AAGCCGCCCCAGAATGTCAACGGTGGTGACAATGCTAGAAGACGGTATCGCGGAGCACTGGGATGCATGGCAAAGGAAGA
CGATTGTGCAGGCAAGCCTGCAAGGAGGACAGGGCGTTTCTGAGGCTCGCAATGACTCTGTTGCAAATCTCCCTCCAGAC
ACATTGTCTGGTCCAAGGTGACTGCCACCTTAAGGACTATGAAGGGTGGTTCTTNNNTTGTAGAGCTTAGTGAACTTAGA
CAGAACACTTGCCATTCTTAAAAAAACAGCAGATTATATGTTTTCTTGTAGCATGTGTATGTATTTTAGTTTTTCCCCTT
TTTTTCAAGTAATTCATAATCACTACTAGACACAGGGCTTTCAGAAACTGTTCAGAAACCACATCATAGTTATGCTAACG
CATCAATACATGTGGTTGTGCTACTCCAGGATCATCAAAGGCGGTTATTTAACCCTCTCTGAAAAAAAAACATAACTAGA
GATGGCTCGAAGGTGAGCTGTAACCTATTGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis