Browse Element(s) Details


Os.17772.1.S1_at

Description gb:AK103804.1
DB_XREF= gi:32989013
TID=Os.17772.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033146K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033146K04, full insert sequence.
FL= gb:AK103804.1 gb:AK073412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0466010/11Protein arginine N-methyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04680OsAffx.11893.1.S1_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04680OsAffx.11893.1.S1_s_at11/112+2106371..2110538SBP domain containing protein, expressed
LOC_Os02g04690Os.17826.1.A1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_x_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690Os.51748.1.S1_at11/112+2110921..2120419Cycloartenol synthase, putative, expressed
LOC_Os02g04690OsAffx.29895.1.S1_at1/112+2110921..2120419Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008276molecular_functionprotein methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17772.1.S1_at--122--1871Chr02:2087377..2087401 (25 bp)
ACGAGTGGGCTGTGACGGCACCTTC
LOC_Os02g04660
Os.17772.1.S1_at--1031--9231Chr02:2087352..2087376 (25 bp)
TCCATCACCAATCCATAACAGCAAT
LOC_Os02g04660
Os.17772.1.S1_at--1057--7791Chr02:2087327..2087351 (25 bp)
GGTCGATCATATTGGGTCGGCCTAT
LOC_Os02g04660
Os.17772.1.S1_at--322--10071Chr02:2087318..2087342 (25 bp)
TATTGGGTCGGCCTATAAGTAAAGC
LOC_Os02g04660
Os.17772.1.S1_at--979--2651Chr02:2087297..2087321 (25 bp)
AAGCCATGAAGCCAGTTTTGTTTTG
LOC_Os02g04660
Os.17772.1.S1_at--707--6011Chr02:2087224..2087248 (25 bp)
GAGAGAACAGATTCCATTGTATGGT
LOC_Os02g04660
Os.17772.1.S1_at--800--5711Chr02:2087185..2087209 (25 bp)
GACTCTTTATCAGATATGCTGCGTG
LOC_Os02g04660
Os.17772.1.S1_at--385--9111Chr02:2087169..2087193 (25 bp)
TGCTGCGTGGGAGATTGATTCTTCA
LOC_Os02g04660
Os.17772.1.S1_at--559--6571Chr02:2087153..2087177 (25 bp)
GATTCTTCAGCCTTAAAGCAAGTGA
LOC_Os02g04660
Os.17772.1.S1_at--1023--2551Chr02:2087127..2087151 (25 bp)
AACTGACAGTGGAAGAAACGCATCT
LOC_Os02g04660
Os.17772.1.S1_at--233--6331NONE
GATGCACAGGACCAGAGCACCCCAA
NONE
Target Sequence 
ACGAGTGGGCTGTGACGGCACCTTCTCCATCACCAATCCATAACAGCAATGGTCGATCATATTGGGTCGGCCTATAAGTA
AAGCCATGAAGCCAGTTTTGTTTTGTTCCGATTTTCTTTTTAGGGATTCTTTTTGTTGTCTTTTGAAAGAGAGGAGAGAA
CAGATTCCATTGTATGGTTTCTTGTGTGGAGTGACTCTTTATCAGATATGCTGCGTGGGAGATTGATTCTTCAGCCTTAA
AGCAAGTGATAACTGACAGTGGAAGAAACGCATCTNTGGATGCACAGGACCAGAGCACCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis