Browse Element(s) Details


Os.17804.1.S1_at

Description gb:AK065471.1
DB_XREF= gi:32975489
TID=Os.17804.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013101M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006H14, full insert sequence.
FL= gb:AK065471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0765411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07590OsAffx.16138.1.S1_at10/117+3803330..3804247hypothetical protein
LOC_Os07g07600OsAffx.13097.1.S1_s_at11/117+3804984..3810748hypothetical protein
LOC_Os07g07600Os.46613.1.S2_at4/117+3804984..3810748hypothetical protein
LOC_Os07g07610Os.20376.1.S1_at11/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07610Os.40201.1.S1_at1/117+3812283..3815641DNA-directed RNA polymerase II 13.6 kDa polypeptide, putative, expressed
LOC_Os07g07620OsAffx.16139.1.S1_at11/117+3816400..3819018exostosin family protein, putative, expressed
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008517molecular_functionfolic acid transporter activity
GO:0015231molecular_function5-formyltetrahydrofolate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17804.1.S1_at--19--7311Chr07:3837972..3837996 (25 bp)
GTGCTGGTCTAACTCAATTTTTTGG
LOC_Os07g07654
Os.17804.1.S1_at--531--451Chr07:3838020..3838044 (25 bp)
ATCTAGCTCTCTTGATTGTCATCTG
LOC_Os07g07654
Os.17804.1.S1_at--342--51Chr07:3838034..3838058 (25 bp)
ATTGTCATCTGCAATCTCAGTGCGC
LOC_Os07g07654
Os.17804.1.S1_at--581--10091Chr07:3838077..3838101 (25 bp)
TAGGCCTCCTTCCAGAGGAATCAGG
LOC_Os07g07654
Os.17804.1.S1_at--457--2051Chr07:3838135..3838159 (25 bp)
ACTTGAGGATTTCTCTAGCTCTGCC
LOC_Os07g07654
Os.17804.1.S1_at--953--10091Chr07:3838215..3838239 (25 bp)
TATGAACTCATACTGCGGAAGTGCA
LOC_Os07g07654
Os.17804.1.S1_at--679--3331Chr07:3838256..3838280 (25 bp)
CACTGCTTTCATCACTTAGGTCAAA
LOC_Os07g07654
Os.17804.1.S1_at--483--1151Chr07:3838289..3838313 (25 bp)
AGTCTGACCATTAACTTGCAAGCTG
LOC_Os07g07654
Os.17804.1.S1_at--253--5171Chr07:3838306..3838330 (25 bp)
GCAAGCTGGTACCATGGTTCAAGAT
LOC_Os07g07654
Os.17804.1.S1_at--847--10451Chr07:3838394..3838418 (25 bp)
TTACAGTTTAGCACGTATACCAAAG
LOC_Os07g07654
Os.17804.1.S1_at--1068--10111Chr07:3838475..3838499 (25 bp)
TATGTTGCTGATTTAACCCCATGAA
LOC_Os07g07654
Target Sequence 
GTGCTGGTCTAACTCAATTTTTTGGAGTCACTAAGGACAGCTTTAAGAATCTAGCTCTCTTGATTGTCATCTGCAATCTC
AGTGCGCTGCTGCCTCTGCCTCTTCTAGGCCTCCTTCCAGAGGAATCAGGTAATGCAGATGACGAAGAAACAAAACATAA
TTGACTTGAGGATTTCTCTAGCTCTGCCCGTCCAACTCAGATACAGCCCATCGTCTTGGAGTTGAATGAATCTGCAGGGA
AAGTATGAACTCATACTGCGGAAGTGCAGATAGCTTCAATTGGCCACTGCTTTCATCACTTAGGTCAAACTTTTTTTAGT
CTGACCATTAACTTGCAAGCTGGTACCATGGTTCAAGATCATCAGAAAATGAGCTTCAATGCTAAACAATACAGGTATAT
CATTTTTTTCTCCTTTTCCATTTTACAGTTTAGCACGTATACCAAAGTCTAATTTACAATGTGTCTATGTGTANTGAGCA
AGTGTTGTAATTTTTNTACTCTTTATGTTGCTGATTTAACCCCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis