Browse Element(s) Details


Os.17859.1.S1_a_at

Description gb:AK068570.1
DB_XREF= gi:32978587
TID=Os.17859.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151G13, full insert sequence.
FL= gb:AK068570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1177011/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11720Os.46933.1.S1_at11/115+6632074..6635697Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11730Os.21185.1.S1_at11/115+6636795..6640807Shaggy-related protein kinase iota, putative, expressed
LOC_Os05g11740OsAffx.14644.1.S1_at11/115+6643031..6643524hypothetical protein
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11780Os.11160.1.S2_at11/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780Os.11160.1.S1_at10/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780OsAffx.31123.1.S1_x_at1/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11790Os.54906.1.S1_at11/115+6680368..6682248CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g11800OsAffx.26841.1.S1_at11/115+6692980..6693614hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17859.1.S1_a_at--1040--5391Chr05:6671358..6671382 (25 bp)
GAAGCTCACGATAACTCTGCAACAG
LOC_Os05g11770
Os.17859.1.S1_a_at--788--3391Chr05:6671380..6671404 (25 bp)
CAGCTGAGACAGTTCCTTGCGAAGA
LOC_Os05g11770
Os.17859.1.S1_a_at--920--8851Chr05:6671426..6671450 (25 bp)
TGATGCTGAGATGCCACACGAAGAT
LOC_Os05g11770
Os.17859.1.S1_a_at--1053--8851Chr05:6671498..6671522 (25 bp)
TGATGCCAAAAGACCTCTGCCTGAT
LOC_Os05g11770
Os.17859.1.S1_a_at--628--6511Chr05:6671538..6671562 (25 bp)
GATATACCTGACGACAAGTGCTTGC
LOC_Os05g11770
Os.17859.1.S1_a_at--1015--2131Chr05:6671595..6671619 (25 bp)
ACAGAGCGGCACTACAAGCGACGGA
LOC_Os05g11770
Os.17859.1.S1_a_at--563--8191Chr05:6671617..6671641 (25 bp)
GGAAGTTTCTGGTCTCTGAAGCAAC
LOC_Os05g11770
Os.17859.1.S1_a_at--826--10072Chr05:6671667..6671691 (25 bp)
TAGGTGCTAGTTTTCGCTTTGTGTT
LOC_Os05g11770
Os.17859.1.S1_a_at--183--9191Chr05:6671710..6671734 (25 bp)
TGCCTTTACGCAATATCCTTGTCTT
LOC_Os05g11770
Os.17859.1.S1_a_at--35--10131Chr05:6671791..6671815 (25 bp)
TATGAAACTCTGATGCCTAGCTGCC
LOC_Os05g11770
Os.17859.1.S1_a_at--43--3831Chr05:6671811..6671835 (25 bp)
CTGCCTGCATGACCAACTTTTGTTA
LOC_Os05g11770
Target Sequence 
GAAGCTCACGATAACTCTGCAACAGCTGAGACAGTTCCTTGCGAAGACAATGCAACAACCAGCATAACTGATGCTGAGAT
GCCACACGAAGATAGCACATGTAGCGTGAAGGGTGAAGCAATTTCGGATAACACAGCATCTGATGCCAAAAGACCTCTGC
CTGATAGCACCTACATAGAAGATATACCTGACGACAAGTGCTTGCAGAAAGATGATGGCGGGGGTGATGAAGCAAAAACA
GAGCGGCACTACAAGCGACGGAAGTTTCTGGTCTCTGAAGCAACATCTTGAGATTAGATTGGACCTGTGTAGGTGCTAGT
TTTCGCTTTGTGTTATATGTATTCATTTTTATTGCCTTTACGCAATATCCTTGTCTTCTATAGGTGAGTCCATGAAATTT
GTAAGTTATGAATAGACATAGACCTCANGAGCTATATGAAACTCTGATGCCTAGCTGCCTGCATGACCAACTTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17859.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis