Browse Element(s) Details


Os.18001.1.S1_at

Description gb:AK103098.1
DB_XREF= gi:32988307
TID=Os.18001.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0035I14.15 (OSJNBb0035I14.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118M16, full insert sequence.
FL= gb:AK103098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4404010/11O-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43970Os.35344.18.S1_x_at9/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970Os.35344.3.S1_x_at8/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970OsAffx.22940.5.S1_at7/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43970OsAffx.22940.5.S1_x_at4/111+25523386..25528938transposon protein, putative, Mutator sub-class
LOC_Os01g43980Os.52319.1.S1_x_at3/111+25530174..25537463AT hook motif-containing protein, putative
LOC_Os01g43990NANA1+25537893..25539150hypothetical protein
LOC_Os01g44000NANA1+25542114..25542356hypothetical protein
LOC_Os01g44010NANA1+25545180..25545707transposon protein, putative, unclassified
LOC_Os01g44020Os.53006.1.S1_at2/111+25546989..25547990hypothetical protein
LOC_Os01g44020Os.38237.1.S1_s_at1/111+25546989..25547990hypothetical protein
LOC_Os01g44030OsAffx.13596.1.S1_at9/111+25549249..25550842hypothetical protein
LOC_Os01g44040Os.18001.3.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.2.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.3.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.1.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.27520.2.S1_x_at1/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44050Os.4863.1.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44050Os.4863.2.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44069Os.33373.1.S2_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S2_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_x_at11/111+25583849..25590634Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016413molecular_functionO-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18001.1.S1_at--670--731Chr01:25560335..25560359 (25 bp)
ATGTTCACGGTAGAAGTTTGCTTGT
LOC_Os01g44040
Os.18001.1.S1_at--508--10791Chr01:25560366..25560390 (25 bp)
TTGTTAGAATGATCCGTCGACCGTC
LOC_Os01g44040
Os.18001.1.S1_at--728--4451Chr01:25560394..25560418 (25 bp)
GCCTAGTTCCACCTTGCAGATGGAG
LOC_Os01g44040
Os.18001.1.S1_at--1154--5031Chr01:25560409..25560433 (25 bp)
GCAGATGGAGATAAGTGCACTCCAA
LOC_Os01g44040
Os.18001.1.S1_at--60--6171NONE
GAGGATATTGTTTTCCACCACTTTG
NONE
Os.18001.1.S1_at--1114--10171Chr01:25560476..25560500 (25 bp)
TATACATTCAGGCAGTCCTTGCGTT
LOC_Os01g44040
Os.18001.1.S1_at--369--5011Chr01:25560487..25560511 (25 bp)
GCAGTCCTTGCGTTCTTTTAGAAGT
LOC_Os01g44040
Os.18001.1.S1_at--764--1191Chr01:25560515..25560539 (25 bp)
AGTTGGTTGCAGACTTTTAGCCATA
LOC_Os01g44040
Os.18001.1.S1_at--191--3071Chr01:25560565..25560589 (25 bp)
AATCAAAGTCACTGAAACACCCAGT
LOC_Os01g44040
Os.18001.1.S1_at--525--2471Chr01:25560580..25560604 (25 bp)
AACACCCAGTGGTAGATTCGTGCAT
LOC_Os01g44040
Os.18001.1.S1_at--806--6571Chr01:25560594..25560618 (25 bp)
GATTCGTGCATTGGTCATATTTCAG
LOC_Os01g44040
Target Sequence 
ATGTTCACGGTAGAAGTTTGCTTGTGAATTGTTGTTAGAATGATCCGTCGACCGTCGGCGCCTAGTTCCACCTTGCAGAT
GGAGATAAGTGCACTCCAAATAGGAAGAGGATATTGTTTTCCACCACTTTGGAAAGTAATGTATACATTCAGGCAGTCCT
TGCGTTCTTTTAGAAGTAATAGTTGGTTGCAGACTTTTAGCCATAAAAAGTGTACAAGGAATTTCTGTAAAATCAAAGTC
ACTGAAACACCCAGTGGTAGATTCGTGCATTGGTCATATTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis