Browse Element(s) Details


Os.18405.1.S1_at

Description gb:AY438639.1
DB_XREF= gi:40365139
GEN=CenH3
TID=Os.18405.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18405 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) centromeric histone 3 (CenH3) mRNA, complete cds.
PROD=centromeric histone 3
FL= gb:AK101975.1 gb:AY438639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4108010/11Histone H3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41010Os.25020.1.S1_at11/115+23957763..23960697oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g41030Os.8994.1.S1_at11/115+23962324..23964637Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g41040NANA5+23967746..23971172transposon protein, putative, Mutator sub-class
LOC_Os05g41050OsAffx.27271.1.S1_at11/115+23971575..23972158hypothetical protein
LOC_Os05g41060Os.10931.1.S1_at9/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41060Os.4733.1.S1_at1/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed
LOC_Os05g41090Os.53033.1.S1_at11/115+23987984..23991882Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed
LOC_Os05g41100Os.51939.1.S1_at11/115+23992386..23994674Krr1 family protein, expressed
LOC_Os05g41110Os.22564.1.S1_at11/115+23994851..2399676660S ribosomal protein L30, putative, expressed
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18405.1.S1_at--195--10311Chr05:23985738..23985856 (25 bp)
TTTCTCGGCTGGTCAGGGAGATCAC
LOC_Os05g41080
Os.18405.1.S1_at--967--7991Chr05:23985698..23985722 (25 bp)
GGATGTGTCACGGTGGACCCTTGAA
LOC_Os05g41080
Os.18405.1.S1_at--811--6191Chr05:23985218..23985241 (24 bp)
GAGGCAGCAGAATACCACTTAGTGG
LOC_Os05g41080
Os.18405.1.S1_at--543--1111Chr05:23985183..23985207 (25 bp)
AGTGTCAAATCTCTGCGCCATCCAT
LOC_Os05g41080
Os.18405.1.S1_at--3--4851Chr05:23984801..23985182 (25 bp)
GCTAAGCGTGTTACCATCATGCAAA
LOC_Os05g41080
Os.18405.1.S1_at--743--951Chr05:23984776..23984800 (25 bp)
AGGACATGCAACTTGCCAGGCGTAT
LOC_Os05g41080
Os.18405.1.S1_at--1055--3111Chr05:23984728..23984752 (25 bp)
AATTTGTTTGCGAGCCATGCAGCAT
LOC_Os05g41080
Os.18405.1.S1_at--942--3611Chr05:23984621..23984645 (25 bp)
CTTCGTTCCCATTCTAATTCAGTTG
LOC_Os05g41080
Os.18405.1.S1_at--47--6791Chr05:23984594..23984618 (25 bp)
GTTAGTATTTACCTTTTGCTCCATT
LOC_Os05g41080
Os.18405.1.S1_at--609--4771Chr05:23984577..23984601 (25 bp)
GCTCCATTTGGATTGGTCGAATTCA
LOC_Os05g41080
Os.18405.1.S1_at--717--6591Chr05:23984502..23984525 (24 bp)
GATTGCAATAATGGGTTCCTCTCAA
NONE
Target Sequence 
TTTCTCGGCTGGTCAGGGAGATCACTGATTTCTATTCAAAGGATGTGTCACGGTGGACCCTTGAAGCTCTNCCTTGCATT
GCAAGAGGCAGCAGAATACCACTTAGTGGACATATTTGAAGTGTCAAATCTCTGCGCCATCCATGCTAAGCGTGTTACCA
TCATGCAAAAGGACATGCAACTTGCCAGGCGTATCGGTGGGCGGAGGCCATGGTGAAAATTTGTTTGCGAGCCATGCAGC
ATGATGGACAAGGAGCAACATGTGTCGTTGATTAACATTTTAGAAAGTAGTGTAGATGTATCTTCACATAGGGATCAACT
TACCCTTCGTTCCCATTCTAATTCAGTTGATGTTAGTATTTACCTTTTGCTCCATTTGGATTGGTCGAATTCAGGATTTC
ATCAAACAGTCGATTGTGAAATGTGAACCAGGAATTGTTGTGTTGATTGCAATAATGGGTTCCTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis