Browse Element(s) Details


Os.18529.2.S1_at

Description gb:AK101704.1
DB_XREF= gi:32986913
TID=Os.18529.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060G13, full insert sequence.
FL= gb:AK105045.1 gb:AK101704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4101011/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40950OsAffx.17445.1.S1_at11/118+25781229..25781666hypothetical protein
LOC_Os08g40960NANA8+25783313..25788051retrotransposon protein, putative, unclassified
LOC_Os08g40970OsAffx.22896.1.S1_x_at1/118+25790299..25792106retrotransposon protein, putative, unclassified
LOC_Os08g40980Os.28943.1.S1_x_at2/118+25792730..25795954retrotransposon protein, putative, unclassified
LOC_Os08g40990Os.18230.1.S1_at9/118+25798050..25801190Leucine Rich Repeat family protein, expressed
LOC_Os08g41000OsAffx.6098.1.S1_at11/118+25801751..25803349expressed protein
LOC_Os08g41010Os.18529.2.S1_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41010Os.18529.1.S1_a_at11/118+25804243..25809602Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os08g41020NANA8+25810938..25815327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g41030Os.55500.1.S1_at11/118+25817415..25818314AP2 domain containing protein, expressed
LOC_Os08g41040Os.17091.1.S1_at11/118+25820114..25821925expressed protein
LOC_Os08g41054OsAffx.17446.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41054OsAffx.6099.1.S1_x_at11/118+25823463..25825192hypothetical protein
LOC_Os08g41070OsAffx.28903.2.S1_x_at11/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.2.S1_at10/118+25826008..25833843expressed protein
LOC_Os08g41070OsAffx.28903.1.S1_x_at7/118+25826008..25833843expressed protein
LOC_Os08g41070Os.50232.1.S1_x_at1/118+25826008..25833843expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18529.2.S1_at--691--571Chr08:25809033..25809057 (25 bp)
ATCCATGTGGATGTGCTTCTATCAG
LOC_Os08g41010
Os.18529.2.S1_at--597--2091Chr08:25809113..25809137 (25 bp)
ACATCGTGTGATGGCCAGCCTTGAT
LOC_Os08g41010
Os.18529.2.S1_at--393--2271Chr08:25809148..25809172 (25 bp)
AAATCAGTCTTACTCCGTACCATAT
LOC_Os08g41010
Os.18529.2.S1_at--10--5111Chr08:25809186..25809210 (25 bp)
GCACACCGGAAGCATAGTCATTTTT
LOC_Os08g41010
Os.18529.2.S1_at--804--7211Chr08:25809217..25809241 (25 bp)
GTCGATTGCTTCTTCCACAGTAAAG
LOC_Os08g41010
Os.18529.2.S1_at--151--10371Chr08:25809334..25809358 (25 bp)
TTTTCCTTGTTGAGACGGTATCCTG
LOC_Os08g41010
Os.18529.2.S1_at--278--3971Chr08:25809349..25809373 (25 bp)
CGGTATCCTGGAGCACTTTGTAATA
LOC_Os08g41010
Os.18529.2.S1_at--295--6791Chr08:25809438..25809462 (25 bp)
GTTAGTTGCATGACAGCCTTTCCAA
LOC_Os08g41010
Os.18529.2.S1_at--736--3691Chr08:25809474..25809498 (25 bp)
CTAGCCGTAGTTCTCCCAAAAATGA
LOC_Os08g41010
Os.18529.2.S1_at--43--2651Chr08:25809499..25809523 (25 bp)
AACCATCTTGAGATCCGTTTGCGGT
LOC_Os08g41010
Os.18529.2.S1_at--296--5751Chr08:25809537..25809561 (25 bp)
GACGGTATCTCTGGTTTCAACATCA
LOC_Os08g41010
Target Sequence 
ATCCATGTGGATGTGCTTCTATCAGGAGCAGCTGACAGTATTGCATGCAGTGATCTTGCTAAGGAAGTTGGAGATGGGAA
ACATCGTGTGATGGCCAGCCTTGATGTAAGAATGCAAATCAGTCTTACTCCGTACCATATCTGTGTGGAGTGTGCACACC
GGAAGCATAGTCATTTTTTGAATGGTCGATTGCTTCTTCCACAGTAAAGTCTATAATACCAGTGTGCAGGTGTTTTTTTC
CCTTTCTTTCAGTGTGAAGGTGTTTTTTTACCNCTTTCTTTCGTTCATTCATTCTTTTTCTTTTTCCTTGTTGAGACGGT
ATCCTGGAGCACTTTGTAATACTCTAATGTGCTTCGGAAAGTAGAATATAAGTTGTGCTTATGGGCGGGCCAAAATGCTT
TGGCCGTTAGTTGCATGACAGCCTTTCCAACATGCTGCTGCCTAGCCGTAGTTCTCCCAAAAATGAAACCATCTTGAGAT
CCGTTTGCGGTTGAACTGAAATTAGACGGTATCTCTGGTTTCAACATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18529.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis