Browse Element(s) Details


Os.18568.1.S1_at

Description gb:AK059410.1
DB_XREF= gi:32969428
TID=Os.18568.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C06, full insert sequence.
FL= gb:AK059410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1580011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15760OsAffx.13829.1.S1_at7/114+8537931..8545692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g15770NANA4+8547533..8548168retrotransposon protein, putative, unclassified
LOC_Os04g15780OsAffx.3799.1.S1_at11/114+8550820..8553639hypothetical protein
LOC_Os04g15780OsAffx.31813.1.S1_x_at2/114+8550820..8553639hypothetical protein
LOC_Os04g15780Os.54523.1.S1_at1/114+8550820..8553639hypothetical protein
LOC_Os04g15790Os.6166.1.S1_at10/114+8558818..8565548Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g15800Os.18568.1.S1_at11/114+8566257..8568084expressed protein
LOC_Os04g15810OsAffx.13830.1.S1_x_at11/114+8568385..8568884hypothetical protein
LOC_Os04g15820Os.49490.1.S1_at1/114+8571213..8573158hypothetical protein
LOC_Os04g15840Os.2696.1.S1_at11/114+8578856..8580134Alpha-expansin 11 precursor, putative, expressed
LOC_Os04g15850Os.45976.1.S1_at2/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15850Os.45976.1.S1_x_at1/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.46306.1.S1_x_at7/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.27037.1.A1_at1/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18568.1.S1_at--821--5351Chr04:8566735..8567060 (25 bp)
GAAGATGACCTGGTGAGGCTGCAAT
LOC_Os04g15800
Os.18568.1.S1_at--858--911Chr04:8566720..8566744 (25 bp)
AGGCTGCAATTGGAGGCTCTGCTCG
LOC_Os04g15800
Os.18568.1.S1_at--342--8031Chr04:8566673..8566697 (25 bp)
GGAGAACGCCAACCTGTCCAGGGAA
LOC_Os04g15800
Os.18568.1.S1_at--94--1691Chr04:8566642..8566666 (25 bp)
AGCCTGATTCAGCTGGTGGAGTATC
LOC_Os04g15800
Os.18568.1.S1_at--458--4331Chr04:8566604..8566628 (25 bp)
CCAGGACCTCGCTGAATCTTACGAG
LOC_Os04g15800
Os.18568.1.S1_at--511--9511Chr04:8566551..8566575 (25 bp)
TCTCGTCGCCGCTAGGCAAGATCGA
LOC_Os04g15800
Os.18568.1.S1_at--810--6671Chr04:8566492..8566516 (25 bp)
GTTGCTGTCACTCCATCTGATAAGT
LOC_Os04g15800
Os.18568.1.S1_at--259--3091Chr04:8566424..8566448 (25 bp)
AATAAGCTGGGTCTTCTCCAGTGGT
LOC_Os04g15800
Os.18568.1.S1_at--701--10311Chr04:8566366..8566390 (25 bp)
TTTCTGCTGTTGTATGATGCTTCAA
LOC_Os04g15800
Os.18568.1.S1_at--450--2011Chr04:8566334..8566358 (25 bp)
ACTCTCGGTGGCCATATTTATGTGA
LOC_Os04g15800
Os.18568.1.S1_at--380--8831Chr04:8566312..8566336 (25 bp)
TGATCAATTCCACTTCGTAATGTTG
LOC_Os04g15800
Target Sequence 
GAAGATGACCTGGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGCCAACCTGTC
CAGGGAAAACCAGAGCCTGATTCAGCTGGTGGAGTATCATCAGCTGACCTCCCAGGACCTCGCTGAATCTTACGAGGACG
TAATGGAGGGGATGCGGCTGGACTTCTCGTCGCCGCTAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGA
AGAGTTGCTGTCACTCCATCTGATAAGTTGGAAGCCTTGGNGTCATCTGATGAGTAGATAAATCTGAGGAGAATAAGCTG
GGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATCTTCTATTTCTGCTGTTGTATGATGCTTCAATTTGGC
CACTCTCGGTGGCCATATTTATGTGATCAATTCCACTTCGTAATGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis