Browse Element(s) Details


Os.18570.1.S1_at

Description gb:AK072975.1
DB_XREF= gi:32982998
TID=Os.18570.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C74893(E60677),AU089714(E60163),AU030733(E60163)~unknown protein (P0022B05.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148M03, full insert sequence.
FL= gb:AK072975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0297011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18570.1.S1_at--966--2871Chr07:1106571..1106595 (25 bp)
AAGGGCAGTAGATTGTTTTCATGAG
LOC_Os07g02970
Os.18570.1.S1_at--687--931Chr07:1106666..1106690 (25 bp)
AGGCAACCATGAACACTCGGAGCAC
LOC_Os07g02970
Os.18570.1.S1_at--77--3331Chr07:1106679..1106703 (25 bp)
CACTCGGAGCACACAGAGAACCATT
LOC_Os07g02970
Os.18570.1.S1_at--962--5011Chr07:1106736..1106760 (25 bp)
GCAGGGTCATAAAACACAGCATCGT
LOC_Os07g02970
Os.18570.1.S1_at--257--7031Chr07:1106759..1106783 (25 bp)
GTACAAATGCAATCTCTGACTTCCT
LOC_Os07g02970
Os.18570.1.S1_at--797--8931Chr07:1106775..1106799 (25 bp)
TGACTTCCTCAACCTTTGGTCTGCA
LOC_Os07g02970
Os.18570.1.S1_at--984--2631Chr07:1106785..1106809 (25 bp)
AACCTTTGGTCTGCACATGCGCCTG
LOC_Os07g02970
Os.18570.1.S1_at--716--7571Chr07:1106907..1106931 (25 bp)
GGGACTGGTCAAGAAAACACGGATA
LOC_Os07g02970
Os.18570.1.S1_at--365--3531Chr07:1106976..1107000 (25 bp)
CATACGGAGTTGATTTCTAAGTCAT
LOC_Os07g02970
Os.18570.1.S1_at--861--4752Chr07:1107039..1107063 (25 bp)
GCTGCTGTTGGTCTAACTCAAAACT
LOC_Os07g02970
Os.18570.1.S1_at--1077--3511Chr07:1107085..1107109 (25 bp)
CATGATGTTCATTCTCTGGTAATAT
LOC_Os07g02970
Target Sequence 
AAGGGCAGTAGATTGTTTTCATGAGAATGCAGAAGCGAAATTGTATCAGATGCTTTGGAAGTCTAAACATGGTGGTGCAT
ATCTTCAGGTTATGAAGGCAACCATGAACACTCGGAGCACACAGAGAACCATTCGAGGATCTAGGAAAGCGAAGCTGTTG
CAACAGCAGGGTCATAAAACACAGCATCGTACAAATGCAATCTCTGACTTCCTCAACCTTTGGTCTGCACATGCGCCTGT
CCAGCTGCAGGGCTCAATCCTCGATTGGATTCAGAAAGAGAAGGAAGCACAATTAGCACCTCCTCTACTGCGCCTGAAAT
TTTAGATCATGTAACAGGGACTGGTCAAGAAAACACGGATAATTAAATGAATGGAAATGTAATATTCTAGCAGAGAAAAG
TAACTCATACGGAGTTGATTTCTAAGTCATTAGGAGTGTATTGATATGAAATGTGTGCTACATATGCTGCTGCTGTTGGT
CTAACTCAAAACTTATGTTTGTAAATGATGATAACATGATGTTCATTCTCTGGTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis