Browse Element(s) Details


Os.18826.2.S1_at

Description gb:NM_187454.1
DB_XREF= gi:34901993
GEN=OJ1012B02.11
TID=Os.18826.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18826 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OJ1012B02.11), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1585011/11Josephin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18826.2.S1_at--150--2411Chr03:8722551..8722575 (25 bp)
AAAACTGGAATAGTGTTCTTTCGCA
LOC_Os03g15850
Os.18826.2.S1_at--824--8211Chr03:8722545..8722569 (25 bp)
GGAATAGTGTTCTTTCGCATCTGAA
LOC_Os03g15850
Os.18826.2.S1_at--1057--10291Chr03:8722533..8722557 (25 bp)
TTTCGCATCTGAAAGCTACAGCATA
LOC_Os03g15850
Os.18826.2.S1_at--1051--2691Chr03:8722521..8722545 (25 bp)
AAGCTACAGCATACTTAAGTCGGTC
LOC_Os03g15850
Os.18826.2.S1_at--130--4971Chr03:8722513..8722537 (25 bp)
GCATACTTAAGTCGGTCACTCTCAG
LOC_Os03g15850
Os.18826.2.S1_at--1039--9871Chr03:8722510..8722534 (25 bp)
TACTTAAGTCGGTCACTCTCAGTGT
LOC_Os03g15850
Os.18826.2.S1_at--787--1151Chr03:8722504..8722528 (25 bp)
AGTCGGTCACTCTCAGTGTTATTTG
LOC_Os03g15850
Os.18826.2.S1_at--410--3331Chr03:8722497..8722521 (25 bp)
CACTCTCAGTGTTATTTGTTGGAAC
LOC_Os03g15850
Os.18826.2.S1_at--421--4351Chr03:8721973..8721997 (25 bp)
CCACAACGTATTCACCGGGAACTAT
LOC_Os03g15850
Os.18826.2.S1_at--1019--8591Chr03:8721841..8721865 (25 bp)
TGGTCTGATGATCAATGTACCCGTC
LOC_Os03g15850
Os.18826.2.S1_at--702--2931Chr03:8721828..8721852 (25 bp)
AATGTACCCGTCAGGAGGTTCAGAG
LOC_Os03g15850
Target Sequence 
AAAACTGGAATAGTGTTCTTTCGCATCTGAAAGCTACAGCATACTTAAGTCGGTCACTCTCAGTGTTATTTGTTGGAACG
GAAAAGGAATCTTTCACCCGAGCTGAGTTAGATGGGATTGCTGGAAATCTCGTCCAGATTGATCCAAATAAGGAGCACTG
GACTCCTATGTCATTGATTTTTAAGCCCCACCACAACGTATTCACCGGGAACTATGATGTAAATGTACTCATCACAGCAT
TAGAAGCTAGAAAGAAGAAGGTAATCTGGCATGATCATCGGAAAGGGGCTTCTTCAATCGATCTGGATGCAGATGCATTG
TTTGGTCTGATGATCAATGTACCCGTCAGGAGGTTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18826.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis