Browse Element(s) Details


Os.18932.1.S1_at

Description gb:AK120986.1
DB_XREF= gi:37990609
TID=Os.18932.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042H12, full insert sequence.
FL= gb:AK120986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2318011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23120Os.16785.1.S1_at11/1110+11736406..11742276pyridoxamine 5'-phosphate oxidase, putative, expressed
LOC_Os10g23130OsAffx.6744.1.S1_at11/1110+11746889..11749084Cytochrome P450 90D2, putative
LOC_Os10g23140NANA10+11749454..11750374retrotransposon protein, putative, unclassified
LOC_Os10g23150OsAffx.20427.1.S1_at11/1110+11750672..11753497retrotransposon protein, putative, unclassified
LOC_Os10g23160NANA10+11754855..11756111ent-kaurenoic acid oxidase, putative
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed
LOC_Os10g23190OsAffx.29313.1.S1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190OsAffx.22896.1.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.46314.2.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.10731.2.A1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23204Os.9220.1.S1_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30513.1.S1_s_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30514.2.S1_s_at10/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204Os.56258.1.S1_at2/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28551.1.S1_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28418.2.S1_x_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23220Os.27757.1.A1_s_at11/1110+11782050..11784935expressed protein
LOC_Os10g23220Os.27757.1.A1_at11/1110+11782050..11784935expressed protein
LOC_Os10g23230OsAffx.18359.1.S1_at11/1110+11788254..11788841hypothetical protein
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009826biological_processunidimensional cell growth
GO:0009965biological_processleaf morphogenesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0042814biological_processmonopolar cell growth
GO:0005783cellular_componentendoplasmic reticulum
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0010012molecular_functionsteroid 22-alpha hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18932.1.S1_at--988--6751Chr10:11761932..11761956 (25 bp)
GTTAAGTTTCAACCCGGATAGATGG
LOC_Os10g23180
Os.18932.1.S1_at--975--391Chr10:11759435..11759459 (25 bp)
ATCAGCGGAGCTAGGCACGTACCAG
LOC_Os10g23180
Os.18932.1.S1_at--623--5731Chr10:11759182..11759206 (25 bp)
GACGCAGGGATTGTTTACCTTCCGC
LOC_Os10g23180
Os.18932.1.S1_at--675--7591Chr10:11759139..11759163 (25 bp)
GGGCAGTGATGTCCTTCAGTGAACT
LOC_Os10g23180
Os.18932.1.S1_at--731--4311Chr10:11759127..11759151 (25 bp)
CCTTCAGTGAACTCTGATGGCAGCT
LOC_Os10g23180
Os.18932.1.S1_at--966--6231Chr10:11759112..11759136 (25 bp)
GATGGCAGCTATATCATTCAGACAT
LOC_Os10g23180
Os.18932.1.S1_at--149--1171Chr10:11759080..11759104 (25 bp)
AGTCACCAGTACATTCTGTGGCTTA
LOC_Os10g23180
Os.18932.1.S1_at--822--3891Chr10:11759065..11759089 (25 bp)
CTGTGGCTTAAGAACTTCAGAGTTC
LOC_Os10g23180
Os.18932.1.S1_at--600--9891Chr10:11759035..11759059 (25 bp)
TACTATTGCTAGGTGCAAGACTGAT
LOC_Os10g23180
Os.18932.1.S1_at--395--8771Chr10:11758977..11759001 (25 bp)
TGTATCACACCAAGCTGAGTTTCTT
LOC_Os10g23180
Os.18932.1.S1_at--96--2991Chr10:11758950..11758974 (25 bp)
AATGTGTTATTCAGTTGTTGTTCCA
LOC_Os10g23180
Target Sequence 
GTTAAGTTTCAACCCGGATAGATGGGATAAATCAGCGGAGCTAGGCACGTACCAGGTGTTCGGTGGCGGCGAGAGGATCT
GCGCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTCCATCATCTCTCTTGTGGTTACAAATGGGAGTTGCTG
AATCCTGACGCAGGGATTGTTTACCTTCCGCACCCAAGGCCAACAGATGGGGCAGTGATGTCCTTCAGTGAACTCTGATG
GCAGCTATATCATTCAGACATAGAATAAAGTCACCAGTACATTCTGTGGCTTAAGAACTTCAGAGTTCATATATACTATT
GCTAGGTGCAAGACTGATTAAGAAAAAGCTGAGAAGCAACAATGCATGATATGTATCACACCAAGCTGAGTTTCTTTAAA
TGTGTTATTCAGTTGTTGTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis