Browse Element(s) Details


Os.18948.1.S1_at

Description gb:AK067279.1
DB_XREF= gi:32977297
TID=Os.18948.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097O08, full insert sequence.
FL= gb:AK067279.1 gb:AK074020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0484011/11Arabinose kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04800Os.48919.1.S1_at10/112+2205767..2207509avirulence-responsive protein, putative, expressed
LOC_Os02g04810OsAffx.2509.1.S1_at11/112+2208480..2214641B3 DNA binding domain containing protein, expressed
LOC_Os02g04820NANA2+2222760..2224908retrotransposon, putative, centromere-specific
LOC_Os02g04830NANA2+2226405..2227106retrotransposon, putative, centromere-specific
LOC_Os02g04840Os.18948.1.S1_at11/112+2230686..2239226Arabinose kinase, putative, expressed
LOC_Os02g04850Os.54649.1.S1_at11/112+2241066..2242600expressed protein
LOC_Os02g04860OsAffx.23903.2.S1_s_at11/112+2242947..2246169expressed protein
LOC_Os02g04860Os.13783.1.S1_at11/112+2242947..2246169expressed protein
LOC_Os02g04870Os.19194.1.S1_at1/112+2248194..2249253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04880OsAffx.24101.1.S1_at8/112+2253514..2256950hypothetical protein
LOC_Os02g04880Os.56006.1.S1_at1/112+2253514..2256950hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_x_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_s_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.1.S1_x_at5/112+2263602..2264879hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019566biological_processarabinose metabolism
GO:0004335molecular_functiongalactokinase activity
GO:0005524molecular_functionATP binding
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18948.1.S1_at--1074--1571Chr02:2231234..2231258 (25 bp)
AGCTCTCTAGTTCATGCAATAATTC
LOC_Os02g04840
Os.18948.1.S1_at--346--3711Chr02:2231210..2231234 (25 bp)
CTAGTGATTAGTGCACCTCTGGTGC
LOC_Os02g04840
Os.18948.1.S1_at--986--3771Chr02:2231194..2231218 (25 bp)
CTCTGGTGCAGACTTCCATTGTGTA
LOC_Os02g04840
Os.18948.1.S1_at--778--6271Chr02:2231130..2231154 (25 bp)
GATGTTCTGCAATAGCTGATAGCCT
LOC_Os02g04840
Os.18948.1.S1_at--104--3591Chr02:2231095..2231119 (25 bp)
CATTTGCATGGGTACACAGTGGCTA
LOC_Os02g04840
Os.18948.1.S1_at--824--7531Chr02:2231077..2231101 (25 bp)
GTGGCTACCGACTTCAACTATTGGA
LOC_Os02g04840
Os.18948.1.S1_at--375--7971Chr02:2231055..2231079 (25 bp)
GGATCGGAGGCTATGCATGCATCAA
LOC_Os02g04840
Os.18948.1.S1_at--291--7631Chr02:2231011..2231035 (25 bp)
GGGACAAGACATGGCTTCTGATCAA
LOC_Os02g04840
Os.18948.1.S1_at--916--1511Chr02:2230952..2230976 (25 bp)
AGCAGCATGGCCTTCTGTTTTCAGA
LOC_Os02g04840
Os.18948.1.S1_at--940--5171Chr02:2230925..2230949 (25 bp)
GCAAGTTGTGCTAACCTGGAGAGAT
LOC_Os02g04840
Os.18948.1.S1_at--962--1311Chr02:2230888..2230912 (25 bp)
AGAGTAACACATCCTTTTCTCCTTT
LOC_Os02g04840
Target Sequence 
AGCTCTCTAGTTCATGCAATAATTCTAGTGATTAGTGCACCTCTGGTGCAGACTTCCATTGTGTAAGTNCAGTATCCAGA
TAATAAAATGGAAGTCTTTAGATTGATGTTCTGCAATAGCTGATAGCCTCAACACCATCCATTTGCATGGGTACACAGTG
GCTACCGACTTCAACTATTGGATCGGAGGCTATGCATGCATCAAGGAGCAGTTGCATTTGCAAGGGACAAGACATGGCTT
CTGATCAAGCAGACAGCAGATGCAAACTGGGCATTGTAGAGTAGCAGCATGGCCTTCTGTTTTCAGATGGCAAGTTGTGC
TAACCTGGAGAGATCTGAATGTTCAGAGAGTAACACATCCTTTTCTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis