Browse Element(s) Details


Os.18957.1.S1_at

Description gb:AK100055.1
DB_XREF= gi:32985264
TID=Os.18957.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.18957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157P15, full insert sequence.
FL= gb:AK100055.1 gb:AK058451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4755011/11Cadmium/zinc-transporting ATPase HMA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified
LOC_Os06g47520Os.56282.1.S1_at11/116+28767496..28769448expressed protein
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590OsAffx.5138.1.S1_at11/116+28817164..28818182AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0009767biological_processphotosynthetic electron transport
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0004008molecular_functioncopper-exporting ATPase activity
GO:0005375molecular_functioncopper ion transporter activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18957.1.S1_at--122--4831Chr06:28789417..28789441 (25 bp)
GCTCTTGCAGCTGCAACGGTTGGTA
LOC_Os06g47550
Os.18957.1.S1_at--419--10831Chr06:28789398..28789422 (25 bp)
TTGGTATAGTTCTAGCCCAGCGTGC
LOC_Os06g47550
Os.18957.1.S1_at--834--1631Chr06:28789364..28789388 (25 bp)
AGCGGTGGCTGTTGCAGATGTTCTT
LOC_Os06g47550
Os.18957.1.S1_at--640--1111Chr06:28789170..28789194 (25 bp)
AGTGTAGCTCTTGCATTGTCTTGTA
LOC_Os06g47550
Os.18957.1.S1_at--371--9592Chr11:9278893..9279069 (25 bp)
TCTTGTATTGTTTTTGCGGCACTTC
NONE
Os.18957.1.S1_at--1112--5091Chr06:28789134..28789158 (25 bp)
GCACTTCCTTCTGTTTTGGGATTTC
LOC_Os06g47550
Os.18957.1.S1_at--169--4771Chr06:28788338..28788362 (25 bp)
GCTGCTTCACGAGGGAGGAACTCTT
LOC_Os06g47550
Os.18957.1.S1_at--408--951Chr06:28788323..28788347 (25 bp)
AGGAACTCTTCTCGTTTGCTTGAAC
LOC_Os06g47550
Os.18957.1.S1_at--1062--3251Chr06:28788284..28788308 (25 bp)
CAACAGTCCGACATGGTCTTGGGTA
LOC_Os06g47550
Os.18957.1.S1_at--908--6331Chr06:28788178..28788202 (25 bp)
GATGCTGTTCCGTTGTAGATATTAT
LOC_Os06g47550
Os.18957.1.S1_at--371--3511Chr06:28788059..28788083 (25 bp)
CATGTACTCGTATCACTATCGTGTA
LOC_Os06g47550
Target Sequence 
GCTCTTGCAGCTGCAACGGTTGGTATAGTTCTAGCCCAGCGTGCCAGTGCAACAGCGGTGGCTGTTGCAGATGTTCTTTT
GTTGCAGGATAATATATGTGGGGTGCCATTTTGTATAGCTAAAGCTCGTCAAACAACTTCTTTGGTCAAGCAAAGTGTAG
CTCTTGCATTGTCTTGTATTGTTTTTGCGGCACTTCCTTCTGTTTTGGGATTTCTTCCTCTTTGGTTGACGGTGCTGCTT
CACGAGGGAGGAACTCTTCTCGTTTGCTTGAACTCAATACGAGCACTCAACAGTCCGACATGGTCTTGGGTAGATGATAT
TCGGCAACTCATTAATAGCCTAAGAAAGTACATCTCGTCAAAGTTACAGAGTACTTCGTCAAACTATGTAGNTGATGCTG
TTCCGTTGTAGATATTATGTACAGCAACAGTTTTCTGTCAGCTTTGTATGTATGGTACTGTTGGAATTTTGACGAGGAGT
TCTAAGTTGTAACCAAATTTTTGTAGGATGTACATGTACTCGTATCACTATCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis