Browse Element(s) Details


Os.18982.1.S1_at

Description gb:AK066998.1
DB_XREF= gi:32977016
TID=Os.18982.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089L11, full insert sequence.
FL= gb:AK066998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3739011/11G10 protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37350OsAffx.14993.1.S1_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.53059.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350OsAffx.14993.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.26665.1.S1_x_at8/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37360OsAffx.27208.1.S1_at11/115+21774732..21775010hypothetical protein
LOC_Os05g37370NANA5+21781235..21781789retrotransposon protein, putative, unclassified
LOC_Os05g37380NANA5+21782334..21788489retrotransposon protein, putative, unclassified
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed
LOC_Os05g37400Os.15514.1.S1_at11/115+21798628..21805868expressed protein
LOC_Os05g37400Os.15514.1.S2_at11/115+21798628..21805868expressed protein
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18982.1.S1_at--1002--1011Chr05:21794768..21794792 (25 bp)
AGGTTATGAGCGTCTTTGCTGCCTC
LOC_Os05g37390
Os.18982.1.S1_at--561--2071Chr05:21794829..21794853 (25 bp)
ACTTGTGTCTGTAGGGTCCCCAAGC
LOC_Os05g37390
Os.18982.1.S1_at--137--1111Chr05:21794910..21794934 (25 bp)
AGTGGTGATTGAAGTCGCTGTCCTG
LOC_Os05g37390
Os.18982.1.S1_at--782--7231Chr05:21794923..21794947 (25 bp)
GTCGCTGTCCTGTGGCTACAAATAA
LOC_Os05g37390
Os.18982.1.S1_at--653--7071Chr05:21794955..21794979 (25 bp)
GTAATCGCTCGAGATGTTTCCTTGT
LOC_Os05g37390
Os.18982.1.S1_at--414--6852Chr05:21794970..21794994 (25 bp)
GTTTCCTTGTGTTTGATCTCTGTTA
LOC_Os05g37390
Os.18982.1.S1_at--836--891Chr05:21795022..21795046 (25 bp)
AGGCGATTCGTGTGGTGTACTGTAA
LOC_Os05g37390
Os.18982.1.S1_at--957--6991Chr05:21795038..21795062 (25 bp)
GTACTGTAAACTCTTGGGCTATGGC
LOC_Os05g37390
Os.18982.1.S1_at--389--4871Chr05:21795055..21795079 (25 bp)
GCTATGGCATGTGTCTGGTGAGTAA
LOC_Os05g37390
Os.18982.1.S1_at--474--10251Chr05:21795136..21795160 (25 bp)
TTTGATGGATTACTGTACCCCGCTA
LOC_Os05g37390
Os.18982.1.S1_at--755--6911Chr05:21795184..21795208 (25 bp)
GTATGAACACTTCCTTGCTACAGAG
LOC_Os05g37390
Target Sequence 
AGGTTATGAGCGTCTTTGCTGCCTCCGATGCATACAGACACGAGACCACAACTTTGCNACCACTTGTGTCTGTAGGGTCC
CCAAGCACCTCAGGGAAGAAAAGGTTATAGAGTGTGTCCATTGTGGGTGCAGAGGGTGTGCCAGTGGTGATTGAAGTCGC
TGTCCTGTGGCTACAAATAATCTGAGAGTAATCGCTCGAGATGTTTCCTTGTGTTTGATCTCTGTTAAGACAAGCACCAT
ATGACCATATAATCAGGCGATTCGTGTGGTGTACTGTAAACTCTTGGGCTATGGCATGTGTCTGGTGAGTAATGACGATT
TCTCAACATGTTGTGTTCGCAAATGGTTCAGTAGAAACTAGCTGGAAGTTTGATGGATTACTGTACCCCGCTAGACCTAC
TTACTACAATACTACTGTATGAACACTTCCTTGCTACAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis