Browse Element(s) Details


Os.19954.1.S1_at

Description gb:AK102328.1
DB_XREF= gi:32987537
TID=Os.19954.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090L22, full insert sequence.
FL= gb:AK063400.1 gb:AK102328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2869011/112-Hydroxyisoflavanone dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28650Os.55582.1.S1_at9/119+17423563..17424621esterase, putative, expressed
LOC_Os09g28660Os.48379.1.A1_x_at11/119+17426502..17427686esterase, putative, expressed
LOC_Os09g28670OsAffx.17950.1.S1_at8/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.28346.1.S1_x_at6/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.50043.1.A1_at1/119+17430825..17435611hypothetical protein
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19954.1.S1_at--364--5091Chr09:17447394..17447418 (25 bp)
GCACGCAGTAACTCGAATTCTACCG
LOC_Os09g28690
Os.19954.1.S1_at--1094--5191Chr09:17447380..17447404 (25 bp)
GAATTCTACCGTACTATTACAGTGA
LOC_Os09g28690
Os.19954.1.S1_at--1019--6071Chr09:17447294..17447318 (25 bp)
GAGTAGTACGGCGAGATTCCATCGT
LOC_Os09g28690
Os.19954.1.S1_at--297--9931Chr09:17447262..17447286 (25 bp)
TACGGCCACGAGTACGTTAATTGGT
LOC_Os09g28690
Os.19954.1.S1_at--419--9331Chr09:17447175..17447199 (25 bp)
TCGCGTCTCGTTTCATTAACTGCAG
LOC_Os09g28690
Os.19954.1.S1_at--660--6831Chr09:17447166..17447190 (25 bp)
GTTTCATTAACTGCAGCCTGCCTAC
LOC_Os09g28690
Os.19954.1.S1_at--765--3811Chr09:17447149..17447173 (25 bp)
CTGCCTACTGTTACCGTGTTATTAC
LOC_Os09g28690
Os.19954.1.S1_at--120--9871Chr09:17447036..17447060 (25 bp)
TACACGTGTCATAGCCAGTGTCACT
LOC_Os09g28690
Os.19954.1.S1_at--592--1691Chr09:17447024..17447048 (25 bp)
AGCCAGTGTCACTCTGTTTCTACTA
LOC_Os09g28690
Os.19954.1.S1_at--8--3852Chr01:24516869..24516888 (20 bp)
CTGCTAGTCTGCTACTACTACGGTG
NONE
Os.19954.1.S1_at--292--2011Chr09:17446949..17446973 (25 bp)
ACTACTACGGTGGTGATTAATCGAA
LOC_Os09g28690
Target Sequence 
GCACGCAGTAACTCGAATTCTACCGTACTATTACAGTGAGTAATTAGCCACTAGTGAGGATTGATGAGGTGATTACATTT
TTCTTTTTTACCTTTCTTTGGAGTAGTACGGCGAGATTCCATCGTNCATCGCTACGGCCACGAGTACGTTAATTGGTTCC
TCCGNCACAAACCGGCAGGACGGAGAGGGGCCGGGACCGTGCTCGATCCCATCCATCGNTCGCGTCTCGTTTCATTAACT
GCAGCCTGCCTACTGTTACCGTGTTATTACAGCTACGGNCAGCGTTGTGCAACGGTGACGACNCATCCAGTGGNTGGCCG
CTGCGTGCAGTNACTAGTACTAGTGAGTACTNCCAGTNTACACGTGTCATAGCCAGTGTCACTCTGTTTCTACTACNTAC
GGGNTCGCAATCTGTAATANTTTTTTTTTGTACTGCTAGTCTGCTACTACTACGGTGGTGATTAATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis