Browse Element(s) Details


Os.20250.1.S1_at

Description gb:AK067892.1
DB_XREF= gi:32977910
TID=Os.20250.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123L02, full insert sequence.
FL= gb:AK067892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0144010/11Integral membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01400Os.52272.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_s_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01400Os.17279.1.S1_at11/116+232787..243624glycyl-tRNA synthetase beta subunit family protein, expressed
LOC_Os06g01410Os.7390.1.S1_at10/116+243855..246786glutamine cyclotransferase precursor, putative, expressed
LOC_Os06g01420NANA6+250421..256376retrotransposon protein, putative, unclassified
LOC_Os06g01430NANA6+257208..260132retrotransposon protein, putative, unclassified
LOC_Os06g01440Os.20250.1.S1_at10/116+265683..271411Integral membrane protein, expressed
LOC_Os06g01450OsAffx.15214.1.S1_x_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01450Os.49839.1.S1_at11/116+270281..274436dehydration-responsive family protein, putative, expressed
LOC_Os06g01460Os.52642.1.S1_at11/116+275727..281165expressed protein
LOC_Os06g01470Os.56352.1.S1_at11/116+281348..283538LOC569692 protein, putative, expressed
LOC_Os06g01480Os.52815.1.S1_at11/116+288313..293071No apical meristem protein, expressed
LOC_Os06g01490Os.4421.1.S1_at11/116+296278..300787Monocopper oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20250.1.S1_at--1035--8071Chr06:270674..270698 (25 bp)
GGAGCTACGTGAAGAGCCTCCTCTA
LOC_Os06g01440
Os.20250.1.S1_at--899--551Chr06:270795..270819 (25 bp)
ATCCTCCTGGGCTTCATACTGAATT
LOC_Os06g01440
Os.20250.1.S1_at--999--5611Chr06:270839..270863 (25 bp)
GACAAAAGTTTTGATGCCTTCCCAT
LOC_Os06g01440
Os.20250.1.S1_at--569--6352Chr06:270851..270875 (25 bp)
GATGCCTTCCCATTTACAGCAAGCC
LOC_Os06g01440
Os.20250.1.S1_at--970--3231Chr06:270870..270894 (25 bp)
CAAGCCCTTCGCAAGATCATAGTGT
LOC_Os06g01440
Os.20250.1.S1_at--485--10511Chr06:270906..270930 (25 bp)
TTCGTTGTACCATAGCACCCTTTTT
LOC_Os06g01440
Os.20250.1.S1_at--23--351Chr06:270958..270982 (25 bp)
ATAACAAGGTCAGGCTTGCCCTGTT
LOC_Os06g01440
Os.20250.1.S1_at--375--5492Chr06:271001..271025 (25 bp)
GAACATTTTATCTGCCTATTATAGA
LOC_Os06g01440
Os.20250.1.S1_at--165--5591Chr06:271024..271048 (25 bp)
GAAATGTAAGCATCACAACTCACAA
LOC_Os06g01440
Os.20250.1.S1_at--458--5271NONE
GAATGCAATGCAGCCAATGGACCAA
NONE
Os.20250.1.S1_at--289--2811Chr06:271080..271103 (24 bp)
AAGATCGTGGTGATACTATCCCAAA
LOC_Os06g01440
Target Sequence 
GGAGCTACGTGAAGAGCCTCCTCTACTACCTGAGCATTNGGCGTGAGCGCGTCGGGCCTCTCGTACGTCGCCGGCCTCCT
CGCCCACTTTGCCCTCATCACCCACCAAACCCCTCCTGCTTCATCCTCCTGGGCTTCATACTGAATTTCTTCTTCTTGTT
TGGTTCGACAAAAGTTTTGATGCCTTCCCATTTACAGCAAGCCCTTCGCAAGATCATAGTGTAAAAGCTCTTNTTCGTTG
TACCATAGCACCCTTTTTTTTTGTCAATAAACTTTGGCAAGGAAAATAACAAGGTCAGGCTTGCCCTGTTCTTTTTACTG
AANAAAAAGAACATTTTATCTGCCTATTATAGAAATGTAAGCATCACAACTCACAAGAATGCAATGCAGCCAATGGACCA
AGGCCACAAGATCGTGGTGATACTATCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis