Browse Element(s) Details


Os.20306.1.S1_at

Description gb:AK064693.1
DB_XREF= gi:32974711
TID=Os.20306.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F03, full insert sequence.
FL= gb:AK064693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4460011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed
LOC_Os04g44620Os.51865.1.S2_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.2.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.1.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44630OsAffx.26147.4.S1_s_at11/114+26188695..26193292transposon protein, putative, unclassified
LOC_Os04g44630OsAffx.26147.2.S1_x_at9/114+26188695..26193292transposon protein, putative, unclassified
LOC_Os04g44640OsAffx.28220.1.S1_s_at10/114+26193723..26204743Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g44640Os.44572.1.S1_x_at7/114+26193723..26204743Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20306.1.S1_at--379--4011Chr04:26173660..26173684 (25 bp)
CGTCCACCAAGTGCGTTGTCAAGTG
LOC_Os04g44600
Os.20306.1.S1_at--1116--1111Chr04:26173681..26173705 (25 bp)
AGTGCAAGAAATGCGTGCCCACCTG
LOC_Os04g44600
Os.20306.1.S1_at--199--1751Chr04:26173701..26173725 (25 bp)
ACCTGCTAGATTTTCCTCCCTTGTA
LOC_Os04g44600
Os.20306.1.S1_at--178--6971Chr04:26173723..26173747 (25 bp)
GTACCGAGATTCCATTCCGCGGGTT
LOC_Os04g44600
Os.20306.1.S1_at--697--9671Chr04:26173764..26173788 (25 bp)
TCACGATCGATACCCATTCCTGTTC
LOC_Os04g44600
Os.20306.1.S1_at--305--3791Chr04:26173789..26173813 (25 bp)
CTCGTCGTGATGTTAACTCTCCACA
LOC_Os04g44600
Os.20306.1.S1_at--66--2011Chr04:26173804..26173828 (25 bp)
ACTCTCCACAATTTACTTTCCTATA
LOC_Os04g44600
Os.20306.1.S1_at--619--1511Chr04:26173849..26173873 (25 bp)
AGCAGGCAAGTCTCATGCACGAGGT
LOC_Os04g44600
Os.20306.1.S1_at--170--7191Chr04:26173903..26173927 (25 bp)
GTCGGATATAATTTTTCGCCCTCGT
LOC_Os04g44600
Os.20306.1.S1_at--642--7011Chr04:26173926..26173950 (25 bp)
GTACTATGTTTCTTCCACGTGAATG
LOC_Os04g44600
Os.20306.1.S1_at--521--5271Chr04:26173946..26173970 (25 bp)
GAATGATCGATGAACTGCACGAGCT
LOC_Os04g44600
Target Sequence 
CGTCCACCAAGTGCGTTGTCAAGTGCAAGAAATGCGTGCCCACCTGCTAGATTTTCCTCCCTTGTACCGAGATTCCATTC
CGCGGGTTGCCCCGGGGCCTCACCTCACGATCGATACCCATTCCTGTTCCTCGTCGTGATGTTAACTCTCCACAATTTAC
TTTCCTATATATATAGATTCAGTTGAATAAGCAGGCAAGTCTCATGCACGAGGTAGATAGGCAGGAGTTATAGAATTTGC
TAAGTCGGATATAATTTTTCGCCCTCGTACTATGTTTCTTCCACGTGAATGATCGATGAACTGCACGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis