Browse Element(s) Details


Os.20593.2.S1_at

Description gb:AK101588.1
DB_XREF= gi:32986797
TID=Os.20593.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051A05, full insert sequence.
FL= gb:AK101588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g260707/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26040OsAffx.4433.1.S1_at10/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.27020.1.S1_x_at2/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.16356.1.S1_at1/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26049OsAffx.27019.1.S1_at11/115+15080388..15081350hypothetical protein
LOC_Os05g26060OsAffx.14835.1.S1_at11/115+15083568..15084648retrotransposon protein, putative, unclassified
LOC_Os05g26070Os.20593.1.S1_x_at11/115+15086368..15088379expressed protein
LOC_Os05g26070Os.20593.2.S1_at7/115+15086368..15088379expressed protein
LOC_Os05g26070Os.5199.2.S1_x_at2/115+15086368..15088379expressed protein
LOC_Os05g26080OsAffx.9860.1.S1_x_at1/115+15091764..15092511transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26090Os.46306.1.S1_x_at1/115+15093335..15094951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.14491.2.S1_x_at3/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.47463.1.S1_x_at2/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26110OsAffx.27020.1.S1_x_at11/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110OsAffx.15837.1.S1_at7/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110Os.18826.1.S1_at1/115+15103420..15112564transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20593.2.S1_at--51--3852Chr01:42139243..42139267 (25 bp)
CTGAAATCATGTCAAGTAAGTCATC
NONE
Os.20593.2.S1_at--1130--7051Chr05:15086575..15086599 (25 bp)
GTAAGTCATCAATTTTTTCCCCATC
LOC_Os05g26070
Os.20593.2.S1_at--333--2851Chr05:15086573..15086597 (25 bp)
AAGTCATCAATTTTTTCCCCATCTA
LOC_Os05g26070
Os.20593.2.S1_at--552--7131Chr05:15086571..15086595 (25 bp)
GTCATCAATTTTTTCCCCATCTAAT
LOC_Os05g26070
Os.20593.2.S1_at--89--131Chr05:15086564..15086588 (25 bp)
ATTTTTTCCCCATCTAATTAGCACT
LOC_Os05g26070
Os.20593.2.S1_at--646--491Chr05:15086524..15086548 (25 bp)
ATCGTCTCATCAAGGTTATTCTTAA
LOC_Os05g26070
Os.20593.2.S1_at--948--4011Chr05:15086522..15086546 (25 bp)
CGTCTCATCAAGGTTATTCTTAATT
LOC_Os05g26070
Os.20593.2.S1_at--80--751NONE
ATGTATTTTGCCCATTGCCTTGTAG
NONE
Os.20593.2.S1_at--176--10211NONE
TATTTTGCCCATTGCCTTGTAGACA
NONE
Os.20593.2.S1_at--180--10711NONE
TTGCCCATTGCCTTGTAGACATGTA
NONE
Os.20593.2.S1_at--458--4171NONE
CCCATTGCCTTGTAGACATGTACTA
NONE
Target Sequence 
CTGAAATCATGTCAAGTAAGTCATCAATTTTTTCCCCATCTAATTAGCACTTTTTTACAGGTTATTATCGTCTCATCAAG
GTTATTCTTAATTATGTATTTTGCCCATTGCCTTGTAGACATGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20593.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis